Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b11
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847    118   3e-27
02_01_0312 - 2082614-2082677,2082815-2082945,2083041-2083129,208...    45   6e-05
06_03_1305 + 29197615-29197779,29198621-29198674,29198781-291988...    38   0.009
03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187           28   5.3  
12_02_0399 - 18600444-18600591,18600626-18601656                       27   9.3  
06_03_0113 - 16786063-16786131,16786229-16786327,16786413-167864...    27   9.3  

>08_02_0936 - 22771416-22771702,22772297-22772393,22772951-22773847
          Length = 426

 Score =  118 bits (285), Expect = 3e-27
 Identities = 55/131 (41%), Positives = 80/131 (61%), Gaps = 4/131 (3%)
 Frame = +3

Query: 249 MAKWGEGDPRWIVEERPDATNVNNWHWTEKNAGPWSKDRLKELFSDLKI--AQNGIVCSI 422
           MAK+GEGD RWIV+ER D TNV+NWHW E++   WS+ RL  L + L +   + G+    
Sbjct: 1   MAKYGEGDARWIVQERADGTNVHNWHWAERDCLEWSRSRLTSLLAGLPVLSGEGGLALRT 60

Query: 423 TEVEKVDGEASANNRKGKLIFFYEWDIKLKW--EGVLAGGSEKIKGEIHIPNLSEENDVS 596
           T ++K+DGEA  N RKGK+I  YE  + L W  E     G  K+ G   +P L++EN   
Sbjct: 61  TALDKLDGEAYVNIRKGKVIPGYELSLTLAWEAEATTESGVVKVSGAAEVPYLADENADE 120

Query: 597 EVDMTVTIKSN 629
           + ++ VT++ +
Sbjct: 121 DPELRVTVRGD 131


>02_01_0312 -
           2082614-2082677,2082815-2082945,2083041-2083129,
           2083223-2083292,2083429-2083509,2083768-2083821,
           2084864-2085067,2086272-2086366,2086976-2086997,
           2087492-2087585,2087677-2087764,2087874-2087979,
           2088103-2088189,2088261-2088309,2088418-2088521,
           2088605-2088697,2088900-2088974,2089316-2089384,
           2090182-2090250,2090339-2090374,2090471-2090565,
           2090836-2090911,2091067-2091153,2091287-2091355,
           2091654-2091731,2091836-2091925,2092436-2092642,
           2092736-2092879
          Length = 841

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
 Frame = +3

Query: 327 WTEKNAGPWSKDRLKELFSDLKIAQNGI-VCSITEVEKVDGEA---SANNRKGKLIFFYE 494
           W EKN   W+  R+KE+   L   +      S+  V K  G+A   +  N+K ++ + YE
Sbjct: 683 WEEKNLNSWANSRIKEMLGSLDSLEFPTGKASLDGVSKCIGDAFLVTVRNKK-RVGYTYE 741

Query: 495 WDIKLKWEGVLAGGSEKIKGEIHIPNLS-EENDVSEVDMTVT 617
             +K K E ++     K+KG + IP  S  E +  EV++  T
Sbjct: 742 LSLKFKGEWLIKEEKMKVKGHLDIPEFSFGELEDLEVEVRFT 783


>06_03_1305 +
           29197615-29197779,29198621-29198674,29198781-29198861,
           29200167-29200409,29200576-29200710
          Length = 225

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 327 WTEKNAGPWSKDRLKELFSDLKIAQNGI-VCSITEVEKVDGEASANNRKGKLIFFYEWDI 503
           W EKN   W+  R+K+L   L   +      S+ EV K  G+A     + K    Y +++
Sbjct: 59  WEEKNLNSWANGRIKDLLGSLDPLEFSTGKASVYEVSKCSGDAFLVTVRNKKRVGYTYEL 118

Query: 504 KLKWEG 521
            LK++G
Sbjct: 119 GLKFKG 124


>03_02_0461 - 8658494-8658876,8659791-8659859,8661746-8662187
          Length = 297

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 173 VNKTTVVDDCNLQISSKRTSSNH 105
           +N+TT V+D +L  +SK TS +H
Sbjct: 205 LNRTTTVEDISLAAASKATSDHH 227


>12_02_0399 - 18600444-18600591,18600626-18601656
          Length = 392

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 232 TQLSKPWP-SGAKVTHDGLWKSARTQQ 309
           TQ   PW   G K  HD LW +AR +Q
Sbjct: 251 TQAGCPWRVHGYKPQHDTLWVAARVEQ 277


>06_03_0113 -
           16786063-16786131,16786229-16786327,16786413-16786469,
           16786795-16786909,16787331-16787413,16787481-16787531,
           16787914-16787951,16788153-16788213
          Length = 190

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/54 (38%), Positives = 26/54 (48%)
 Frame = -2

Query: 533 SSQHTFPFQLYVPFIEKY*FSFSIVR*CFAVDFFYFSNTTDNAVLSYFQITEKF 372
           SS+ T    LY+P I  Y F   I    FA+  FY S +T  AVL   +I   F
Sbjct: 5   SSEKTPSVYLYIPNIIGY-FRIIINFIAFALMLFYVSASTFGAVLDMPEIISLF 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,256,487
Number of Sequences: 37544
Number of extensions: 326972
Number of successful extensions: 956
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)