Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b11
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical pr...   169   1e-42
Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z48582-6|CAN99695.1|  135|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>Z81030-6|CAB02710.1|  342|Caenorhabditis elegans Hypothetical
           protein C01G10.8 protein.
          Length = 342

 Score =  169 bits (411), Expect = 1e-42
 Identities = 74/127 (58%), Positives = 94/127 (74%)
 Frame = +3

Query: 249 MAKWGEGDPRWIVEERPDATNVNNWHWTEKNAGPWSKDRLKELFSDLKIAQNGIVCSITE 428
           MAKWGEGDPRWIVEER DATNVNNWHW+EKNA PWS +RL+EL +        IV +I E
Sbjct: 1   MAKWGEGDPRWIVEERADATNVNNWHWSEKNATPWSLNRLRELLTGFSSEDGPIVVTIDE 60

Query: 429 VEKVDGEASANNRKGKLIFFYEWDIKLKWEGVLAGGSEKIKGEIHIPNLSEENDVSEVDM 608
           ++K+DGEA+ANNRK KLIF +EW I+  +   ++G  ++ KG   IPNLS+END SEVD+
Sbjct: 61  IKKIDGEATANNRKAKLIFLFEWVIEGTFIARVSGSEDEYKGTFDIPNLSDENDASEVDV 120

Query: 609 TVTIKSN 629
             ++  N
Sbjct: 121 NSSLSGN 127


>Z19155-2|CAA79561.1| 1139|Caenorhabditis elegans Hypothetical
           protein F54G8.3 protein.
          Length = 1139

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 9/95 (9%)
 Frame = +3

Query: 366 LKELFSDLKIAQNGIVCSITEVEKVDGEASANNRKGKLI---FFYEWDIKLKWEGVLAGG 536
           LK  F D+ +  NG V ++ E + +D   +  N+K K     F+ E++ + + E     G
Sbjct: 675 LKAAFKDIPLTSNGYVSNVGEKDYLDLTFTVENKKEKAYQANFYLEYN-EEELELPQVQG 733

Query: 537 SEKI------KGEIHIPNLSEENDVSEVDMTVTIK 623
           S+++      K  +H+P  +  N  S+   T+  K
Sbjct: 734 SKRMIAETIGKNIVHLPLGNPMNGASKHQFTIQFK 768


>Z48582-6|CAN99695.1|  135|Caenorhabditis elegans Hypothetical
           protein F27E5.7 protein.
          Length = 135

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 378 FSDLKIAQNGIVCSITEVEKVDGEASANNRKG 473
           FSD ++ +N +VCSI +  K + + +  N +G
Sbjct: 25  FSDFRLPENTVVCSILQDTKCEWKQNWKNAEG 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,551,270
Number of Sequences: 27780
Number of extensions: 309699
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)