Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b11
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.61 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   3.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.2  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   4.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.61
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 459 NNRKGKLIFFYEWDIKLKWEGVL 527
           NNR G+ +   E D KL  +G+L
Sbjct: 359 NNRAGRFLILTESDTKLSSQGIL 381


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 309 NVNNWHWT 332
           NVNNW WT
Sbjct: 68  NVNNWLWT 75


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -3

Query: 583 SSDKFGM*ISPLIFSLPPANTPSHFNFMSHS*KNINFPFLLFADASPSTFSTSVI 419
           +S+   M   P ++S        H     H+ K  N P+ LF D +  T +  VI
Sbjct: 185 ASNFIAMETFPSVYSKTRRRALEHTLDRFHNDKYSNVPYFLFGDFNFRTDTAGVI 239


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 110 YLMCVLMIFASYN 148
           Y+ C++M+F  YN
Sbjct: 353 YIPCIIMVFLYYN 365


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 287 HNPSWVTFAPLGHGL 243
           H P  V F  +GHGL
Sbjct: 319 HTPLSVKFPGMGHGL 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,740
Number of Sequences: 438
Number of extensions: 3754
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)