Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b02
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    27   0.33 
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   2.3  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    24   2.3  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    24   3.1  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    24   3.1  
SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    23   4.1  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    23   5.4  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    22   9.4  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    22   9.4  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    22   9.4  
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    22   9.4  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    22   9.4  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    22   9.4  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 101 HITRVLQHIKRLDSELSMLARHDDFPLY 18
           HI  +  H++ LDS   M++R ++ PLY
Sbjct: 213 HIWDIAPHLRSLDSPGVMVSRKENSPLY 240


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 180 YQSPPFRPTXSVLVYFDRTVPSIS 109
           +  P + P+  +  YFD+T P IS
Sbjct: 184 FDDPVYGPSSFLTSYFDQTTPYIS 207


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 186 PRYQSPPFRPTXSVLVYFDRTVPS 115
           P +  P FRPT ++ V  +  VPS
Sbjct: 233 PAHPVPSFRPTSALKVNMNSNVPS 256


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 195 LRFPRYQSPPFRPTXSVLVY 136
           LRF  Y  P F+P  S+ VY
Sbjct: 366 LRFSIYTHPDFKPPASLWVY 385


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 66  EPFDVL*HACYVFIYLLTAQYGQNKLKLTMSDEM 167
           E FD L +    F +L    YG+  LKL   +EM
Sbjct: 307 EAFDALLNIETEFTFLRNRLYGKKLLKLNEHEEM 340


>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 154 CRTKWR*LITGEPKKLILRVLRRW 225
           C+  +  L+  E +  IL VLRRW
Sbjct: 637 CKCVYASLVASELEHEILEVLRRW 660


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 174 SPPFRPTXSVLVYFDRTVPSISK*THNT 91
           S  F      + YF+RT+ S+S+  H T
Sbjct: 493 SAAFAAQDDFIPYFERTMASLSQCLHTT 520


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 129 GQNKLKLTMSDEMAVIDNGG 188
           G N++KL+    +AVID  G
Sbjct: 785 GSNEIKLSNEKYIAVIDGSG 804


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 159 DEMAVIDNGGTEETNTESIEKVDTDV 236
           +++A+ID    EETN++     +TD+
Sbjct: 693 NKLALIDRKQMEETNSDEDGSKETDL 718


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 171 VIDNGGTEETNTESIEKVDT 230
           ++  GG  E N  ++ KVDT
Sbjct: 270 IVTTGGIPENNDYTVGKVDT 289


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 101 HITRVLQHIKRLDSELSMLARHDDFPLYWSKKN 3
           H+T +L    +L  E+   A+    P+Y  KKN
Sbjct: 68  HLTFLLGVYTQLPKEMLSQAKIKALPIYTPKKN 100


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 105 IYLLTAQYGQNKLKLTMSDEMAVIDNGGTEETNTESIEK 221
           ++++ A    NK+K      + V+D  G E     S+E+
Sbjct: 415 VHMINASLDHNKVKRAAYKYIGVVDIYGFEHFEKNSMEQ 453


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 5/35 (14%)
 Frame = -2

Query: 137 ILTVLCRQ*VN-----EHITRVLQHIKRLDSELSM 48
           ++T LC   VN     E I + + HI ++DS LS+
Sbjct: 196 LVTQLCNIFVNHSKAREDIQKAVNHICKIDSSLSV 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 829,247
Number of Sequences: 5004
Number of extensions: 12225
Number of successful extensions: 28
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)