Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b02
         (240 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823...    28   0.92 
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41...    26   3.7  
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737...    25   8.5  

>04_04_1704 -
           35481041-35481461,35481682-35481810,35482291-35482397,
           35482515-35482583,35482825-35482936,35483013-35483131,
           35483211-35483291,35483629-35483700,35484039-35484239,
           35484442-35484528,35485284-35485523,35485991-35486455,
           35487434-35487556,35487643-35487769,35487851-35487919,
           35488061-35488189,35488628-35488722,35488808-35488876,
           35489332-35489443,35489545-35489663,35489753-35489833,
           35490898-35490969,35491052-35491267,35491524-35491601,
           35491694-35491831,35492403-35492414,35492639-35492872,
           35493076-35493130,35493222-35493352,35493813-35494546,
           35494613-35494820
          Length = 1634

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 IYLLTAQYGQNKLKLTMSDEMAVIDNGGTEETNTESIEK 221
           I+LLT Q G   L LT +  + V+D      T+ +S+++
Sbjct: 663 IFLLTTQVGGLGLTLTKAARVIVVDPAWNPSTDNQSVDR 701


>01_01_0055 -
           415666-415767,416510-416602,416776-416850,416920-417071,
           417147-417267,417567-418289,418408-418489,418575-418681,
           418757-418822,418941-419057,419157-419402
          Length = 627

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 162 EMAVIDNGGTEETNTESIEKVDTDVE 239
           E + I  G T+E NT++  K D DVE
Sbjct: 240 ESSAISEGITDEANTDTTLKGDEDVE 265


>12_01_0805 -
           7378364-7378435,7378534-7378616,7378843-7379020,
           7379822-7379977,7380205-7380308,7381653-7381695,
           7382142-7382234,7382391-7382686,7382795-7382942,
           7383577-7383615
          Length = 403

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 111 LLTAQYGQNKLKLTMSDEMAVIDNGGTEETNTESIEK 221
           L T+Q  QN+  +T   ++  + + G  +T TES  K
Sbjct: 363 LNTSQVSQNEAVITQQSQVNALPSFGRAKTETESYIK 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,308,325
Number of Sequences: 37544
Number of extensions: 78231
Number of successful extensions: 150
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 58
effective length of database: 12,615,796
effective search space used: 264931716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)