Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20b02
         (240 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical pr...    27   1.8  
Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical pr...    26   4.1  
U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical pr...    25   7.2  
AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical ...    25   7.2  
AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical ...    25   7.2  
AF040652-3|AAB95020.1|  103|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    25   9.5  

>Z83234-5|CAB70171.2|  640|Caenorhabditis elegans Hypothetical
           protein K09E4.2 protein.
          Length = 640

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 96  YVFIYLLTAQYGQNKLKLTMSDEMAVID-NGGTEETNTESIEK 221
           Y+ ++   AQ    + +++ ++E A  D N G EE NTE IE+
Sbjct: 575 YLKLHGAGAQQDSEESEISSAEEEASDDENSGEEEPNTEKIEQ 617


>Z75531-7|CAA99798.2|  316|Caenorhabditis elegans Hypothetical
           protein C54D10.8 protein.
          Length = 316

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +3

Query: 132 QNKLKLTMSDEMAVIDNGGTEETNTESIEKVDTDVE 239
           Q + +  + D+MA  +N   ++    S+EK+D D+E
Sbjct: 65  QRESEQKVKDQMAHFENMRLKQETKRSLEKMDEDLE 100


>U29380-1|AAA68740.1|  346|Caenorhabditis elegans Hypothetical
           protein ZK546.7 protein.
          Length = 346

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 77  IKRLDSELSMLARHDDFPLYWSKK 6
           I+++D +  ++   D FP++W +K
Sbjct: 70  IEKIDDKHQLVRCGDSFPIFWKRK 93


>AC024838-7|AAF60820.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.2 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 77  IKRLDSELSMLARHDDFPLYWSKK 6
           I+++D +  ++   D FP++W +K
Sbjct: 105 IEKIDDKHQLVRCGDSFPIFWKRK 128


>AC024838-3|AAF60821.1|  381|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.3 protein.
          Length = 381

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = -2

Query: 77  IKRLDSELSMLARHDDFPLYWSKK 6
           I+++D +  ++   D FP++W +K
Sbjct: 105 IEKIDDKHQLVRCGDSFPIFWKRK 128


>AF040652-3|AAB95020.1|  103|Caenorhabditis elegans Hypothetical
           protein T05A8.3 protein.
          Length = 103

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 55  NSLSSLLMCCSTRVMCSFT 111
           ++ S + +CCSTR+M S T
Sbjct: 14  HNFSCVPVCCSTRIMASST 32


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
            autosome protein2 protein.
          Length = 1758

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 231  PCPPSQYSQY*FLRFPRYQSPPFRP 157
            P P SQ  Q   L+ P  Q PP RP
Sbjct: 1496 PMPVSQQFQQPLLQRPASQPPPARP 1520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,617,074
Number of Sequences: 27780
Number of extensions: 71897
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)