Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a23
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc...    54   3e-08
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   3.5  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   3.5  
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p...    26   4.7  
SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   6.2  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   6.2  
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch...    26   6.2  

>SPCC622.12c |||NADP-specific glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 451

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 28/87 (32%), Positives = 42/87 (48%)
 Frame = +1

Query: 445 ILKLMEPCDHILEIQFPLRRDSGDYEMILGYRAQHSTHRTPTKGGIRFSTDVTRDEVKAL 624
           +L ++   + +LE +     D G+  +  GYR Q ++   P KGG+RF   V    +K L
Sbjct: 35  VLPIISIPERVLEFRVTWEDDKGNCRVNTGYRVQFNSALGPYKGGLRFHPSVNLSILKFL 94

Query: 625 SALMTFKCACVDVPFGGAKAGIKINPK 705
                FK A   +P GG K G   +PK
Sbjct: 95  GFEQIFKNALTGLPMGGGKGGSDFDPK 121


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +1

Query: 466 CDHILEIQFPLRR 504
           CDHI+ +Q+PL+R
Sbjct: 120 CDHIVNLQYPLKR 132


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +1

Query: 562 TPTKGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGIK 693
           TPT  G   ST +T   V+ALS L     ACV  P  G   GIK
Sbjct: 372 TPTPFGEGKST-LTAGLVQALSNLDKLAIACVRQPSQGPTFGIK 414


>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
 Frame = -2

Query: 541 RDSLISFRNRQNRASEEIESQECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQLDR 362
           R+SL   +N  + AS+  + Q+       +L +   S  + + +    NL+   LRQ   
Sbjct: 45  RESLGILQNVTHEASQPFQPQDHPSEAAALLMFHSSSIYNKRCLMAYHNLRLQRLRQYCW 104

Query: 361 LGGKNILPCGRTS-DSHL*EYL*AYLE 284
            GGK +  C  TS  ++  +YL  Y E
Sbjct: 105 SGGKRMESCLDTSLSTYERDYLTRYSE 131


>SPAPB2C8.01 |||glycoprotein |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 571  KGGIRFSTDVTRDEVKALSALMTFKCACVDVPFGGAKAGI 690
            KGG  F    + D   A S   T  C    +PFG    GI
Sbjct: 1179 KGGFNFDFSSSTDTYAATSYAYTATCTQSFLPFGLGNGGI 1218


>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/76 (28%), Positives = 34/76 (44%)
 Frame = +1

Query: 202 QNEALNTMFRIIPAGVNVCCRTYASHEIPDKLKDIPTSANPKFFHMVEYFFHRACQVVED 381
           QN+++N   R+I   ++   R Y    IP   +D    A     H  E F+ R  Q    
Sbjct: 667 QNKSMNERLRVIGKRIDHLERAYRREAIPLWEEDAKQQAE----HDREIFYEREKQ---R 719

Query: 382 KLVEDLKSRTPIEEKK 429
           K V++ K    I++KK
Sbjct: 720 KEVQERKHEQAIKDKK 735


>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
           45|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 558

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 544 VRDSLISFRNRQNRASEEIES-QECDRMVP*VLEYRLLSFSSLQWVSLTSNLQQACLRQ 371
           ++D +   + +  + + EIES  +  + +    EYR LS +  + VSL S + Q   R+
Sbjct: 287 IKDYVSHLQTKSTKKASEIESIADMKQFLEAYPEYRRLSGNVSKHVSLVSEISQVVQRE 345


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,120
Number of Sequences: 5004
Number of extensions: 62701
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)