Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a20
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    26   1.2  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   1.2  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    26   1.6  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    25   3.7  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    24   4.9  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   4.9  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   6.5  
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    24   6.5  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    23   8.6  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    23   8.6  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 133 YMIKTPAR*TNSSSYNEKTRKNFVPHYSKFSYPKL 29
           Y IK P   TN S    K +  F+P Y+K   P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 277 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 173
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 88  NEKTRKNFVPHYSKFSYPKLHK 23
           + KTR++F PH S  S+  LH+
Sbjct: 204 DSKTRQSFPPHSSSSSHNSLHE 225


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 323 FFLHSTHLLNTN*IIFYYFNYP 258
           F L S+H  NT+ ++FY  +YP
Sbjct: 100 FQLLSSHEYNTDDVVFYDVDYP 121


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 100 SSSYNEKTRKNFVPHYSKFSY 38
           SSSY E+TRK F  H++ F +
Sbjct: 78  SSSY-EQTRKPFFHHFNPFEF 97


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 41  REFRIMWYEILPSFFIITAAVGLPGWGLY 127
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 82  KTRKNFVPHYSKFSYPKLHKCFRSEN 5
           +T K  +P + +  YP LHK F SEN
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSEN 817


>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = +1

Query: 16  ENTCVTWDTRI*NNVVRNSSEFFHYNCCCW 105
           + + + WD       +R+    F  +CCCW
Sbjct: 276 DKSVILWDAFT-GEKLRDYKHGFSVSCCCW 304


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 58  HYSKFSYPKLHKCFRSENN 2
           H SK+S P+LH  F    N
Sbjct: 142 HASKYSVPELHTTFLPNTN 160


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/36 (25%), Positives = 20/36 (55%)
 Frame = +2

Query: 119 GLYHIHNLTLGNHYRRSLTDRWSRALYQRDMRLTGN 226
           G+++ HN T+G  + +  ++R  R+    D  + G+
Sbjct: 333 GVHNFHNFTVGQAFHQKNSNRVIRSFTASDPFMIGD 368


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,146
Number of Sequences: 5004
Number of extensions: 24656
Number of successful extensions: 44
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)