Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a16
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    30   0.25 
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    26   5.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.4  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   9.5  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 498 EINCY--NEPKAKI-VLLLNLKSPEDAVPFYKLPMKTLLHIYKVTMNDVEN 641
           + N Y  N  K+ I V + ++KSPE A+    +P+  LLH    T + VEN
Sbjct: 676 QTNAYIENNKKSSIKVAVFDVKSPEKAIATVSVPLPELLHEGYDTFHFVEN 726


>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +3

Query: 540 LLNLKSPEDAVPFYKLPMKTLLHIYKVTMNDV 635
           LLNL+SP+ +     L +K+  +I KVT ND+
Sbjct: 331 LLNLRSPKSSGKADNLTIKSSSNIDKVTSNDL 362


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 594 SLVACRMAQHPLEISSLIVKLFLLLVHCSNLSHLLYSILEFVQ 466
           S +AC +++  ++   +  KLF  L+H SNL   +  ++   Q
Sbjct: 178 SKLACIISKPAVKTPEIYSKLFHYLLHSSNLKAFINPLIPLTQ 220


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 533 YFCFWFIVAIYLIFCIRF*SLYRYINLVIDNFVFAHIIEI*PQNIPKTIIRMR---PYEK 363
           +FCF+F  +++  F   F SL  + N         H+++I  Q    +++      P + 
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSL--HFNFFFRLCRHKHLLDIPDQTTLSSLLHRHTRLPRDV 164

Query: 362 RRNH 351
           RR H
Sbjct: 165 RRKH 168


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 275 FEDYFRQYASNSGNTLLLRY 216
           ++DY+  Y+SN+ NT +  Y
Sbjct: 134 YDDYYPAYSSNAPNTAISNY 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,303,400
Number of Sequences: 5004
Number of extensions: 43106
Number of successful extensions: 122
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)