Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a16
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114...    29   4.2  
03_06_0648 + 35280492-35280645,35281742-35281820,35282491-352825...    27   9.8  

>02_04_0449 +
           23010099-23010317,23010873-23010934,23011399-23011450,
           23011803-23011917,23012024-23012118,23012852-23012958,
           23013042-23013156,23014159-23014203,23014324-23014392
          Length = 292

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -1

Query: 594 SLVACRMAQHPLEISSLIVKLFLLLVHCSN 505
           S++AC MA  PLE SS+ V +F L +  +N
Sbjct: 173 SVIACDMAHTPLESSSVDVAIFCLSLMGTN 202


>03_06_0648 +
           35280492-35280645,35281742-35281820,35282491-35282593,
           35282695-35282815,35283144-35283232,35283324-35283473,
           35285842-35287161
          Length = 671

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 573 AQHPLEISSLIVKLFLLLVHCSNLSHLLYSIL 478
           A  P E    +V LF  + HC N SH   +++
Sbjct: 639 ATQPAEFQKCMVPLFRQIAHCLNSSHFQVTLI 670


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,520,064
Number of Sequences: 37544
Number of extensions: 203223
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)