Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a08
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    36   0.021
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           31   0.80 
06_03_0054 - 16038103-16038251,16038256-16038619                       29   2.4  
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38...    29   4.2  
11_06_0087 - 19919224-19922304                                         28   5.6  
11_01_0474 - 3666236-3668050                                           27   9.8  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 396 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 512
           H+DV PA   D W+ +PF L    E  +KL GRG+TD  G V
Sbjct: 99  HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 363 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVE--RNEKLYGRGSTDDKGPVLGWLHTIN 536
           DP   ++ +  HLD  PA + + W   PF         ++Y RG+ DDK   + +L  I 
Sbjct: 99  DPSLPSLLLNSHLDSVPA-EPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIR 157

Query: 537 AYKGTG 554
             +  G
Sbjct: 158 GLRDAG 163


>06_03_0054 - 16038103-16038251,16038256-16038619
          Length = 170

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +3

Query: 159 KQLLKEAVAIPSVSCDVKYRADCIRMV-HWMQDKLKEVGATTELRDVGFQTID 314
           K +L     +P+    VK   +C   + HW+Q+K K+ G  T    +G Q  D
Sbjct: 11  KDILDNKRPLPTTKV-VKLTEECSNAILHWLQEKKKDPGCPTITCSIGRQHFD 62


>01_01_0050 -
           382451-382864,382950-383020,383131-383176,383302-383333,
           383409-383558,383666-383849,383934-384109,384580-384628,
           384724-384923,385515-385548
          Length = 451

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +3

Query: 363 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHT---I 533
           DP+ N+  +      Q  + +     +P+E V+  + +          P L W  T   +
Sbjct: 79  DPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGPIVPHAQPQLSWSRTLIGV 138

Query: 534 NAYKGTGAELPVNLKFIF 587
             + G GA   V LK +F
Sbjct: 139 GVFLGVGASAAVILKKLF 156


>11_06_0087 - 19919224-19922304
          Length = 1026

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +1

Query: 517 VGCIPSMPIRALVLSCLSI*SSFSNVWRNLVPKGLT 624
           +  +PS+   AL LS  S+ SS +  WR L+P+ LT
Sbjct: 219 IAMLPSLT--ALHLSSCSLPSSSTQQWRRLLPRNLT 252


>11_01_0474 - 3666236-3668050
          Length = 604

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
 Frame = +3

Query: 42  FPAYHQHYSVSSKQVSAKM-ATEKTLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYR 218
           F  Y   Y V  K     +  T KTLP +F Y +Q+    + +  E       SC     
Sbjct: 411 FLVYDHDYCVKEKFWKIMLDTTNKTLPSVFAYKNQSSPCLRCIPSEISGYLLTSCS---- 466

Query: 219 ADCIRMVHWMQDKLKEVGATT 281
           +D  +    + D L    ATT
Sbjct: 467 SDSTKPAAIVVDVLPAAAATT 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,608,835
Number of Sequences: 37544
Number of extensions: 359798
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)