Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a04
         (161 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    23   5.4  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    23   5.4  
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ...    22   9.5  

>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  YVYCVMCIDLSFKSYLIV 108
           Y+YC++ + +SF   +IV
Sbjct: 280 YIYCIISVAISFSICVIV 297


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 55  YVYCVMCIDLSFKSYLIV 108
           Y+YC++ + +SF   +IV
Sbjct: 280 YIYCIISVAISFSICVIV 297


>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 639

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 69  NTIHIVLDVYLQNIGYIII 13
           NT H++  VY Q + Y+++
Sbjct: 141 NTSHMIHQVYDQYLNYVVL 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,667
Number of Sequences: 5004
Number of extensions: 6941
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 2,362,478
effective HSP length: 34
effective length of database: 2,192,342
effective search space used: 41654498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)