Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a04
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   4.2  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   5.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   5.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   5.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   5.6  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   7.4  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 61  YCVMCIDLSFKSYL 102
           YC++ + L+FK ++
Sbjct: 39  YCIIHMGLTFKDFI 52


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLRVI 100
           SS +  +LC+LT  L ++
Sbjct: 29  SSLIFTILCILTLALTLV 46


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLRVI 100
           SS +  +LC+LT  L ++
Sbjct: 29  SSLIFTILCILTLALTLV 46


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLRVI 100
           SS +  +LC+LT  L ++
Sbjct: 29  SSLIFTILCILTLALTLV 46


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLRVI 100
           SS +  +LC+LT  L ++
Sbjct: 29  SSLIFTILCILTLALTLV 46


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLR 94
           S ++C+ + VL  H R
Sbjct: 319 SISICVTVVVLNVHFR 334


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  SSTMCIVLCVLTCHLR 94
           S ++C+ + VL  H R
Sbjct: 319 SISICVTVVVLNVHFR 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,261
Number of Sequences: 438
Number of extensions: 436
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)