Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt20a03
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1097 - 34095179-34095222,34095410-34095507,34096276-340963... 39 0.003
02_05_1108 - 34166672-34166695,34166864-34166932,34167031-341671... 38 0.005
02_05_1103 - 34136955-34136978,34137147-34137215,34137314-341374... 38 0.005
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 38 0.005
03_05_0152 + 21291162-21291287,21291379-21291479,21293257-212933... 37 0.011
09_02_0402 + 8582235-8582360,8582452-8582552,8584328-8584425,858... 36 0.033
03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,177... 28 5.0
02_05_0839 - 32113992-32114210,32114321-32114484,32114612-321147... 28 5.0
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622 28 5.0
08_01_0405 - 3597236-3597549,3598333-3598402 28 6.5
>02_05_1097 -
34095179-34095222,34095410-34095507,34096276-34096376,
34096459-34096584
Length = 122
Score = 39.1 bits (87), Expect = 0.003
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 3/107 (2%)
Frame = +2
Query: 173 NGVKIQENTFGSRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 346
+G +++ G+ D + G+ + + L HPL+AS K+ +K + G
Sbjct: 3 SGGVVKKEIGGNHDVLRFGVNDSVKGDLAPPHPLQASVHKDAKFWADKKRFGA-EAIYGS 61
Query: 347 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 484
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>02_05_1108 -
34166672-34166695,34166864-34166932,34167031-34167154,
34167192-34167256,34167726-34167854,34168473-34168547,
34171613-34171777,34171864-34172063,34172866-34172963,
34173719-34173819,34173915-34174040
Length = 391
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 173 NGVKIQENTFGSRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 346
+G +++ G+ D + G+ + + L HPL+AS K +K + G
Sbjct: 3 SGGVVKKEIGGNHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGA-EAIYGS 61
Query: 347 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 484
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>02_05_1103 -
34136955-34136978,34137147-34137215,34137314-34137437,
34137475-34137539,34138009-34138137,34138756-34138830,
34141896-34142060,34142147-34142346,34143149-34143246,
34144002-34144102,34144198-34144323
Length = 391
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 173 NGVKIQENTFGSRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 346
+G +++ G+ D + G+ + + L HPL+AS K +K + G
Sbjct: 3 SGGVVKKEIGGNHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGA-EAIYGS 61
Query: 347 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 484
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 38.3 bits (85), Expect = 0.005
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Frame = +2
Query: 173 NGVKIQENTFGSRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 346
+G +++ G+ D + G+ + + L HPL+AS K +K + G
Sbjct: 3 SGGVVKKEIGGNHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGA-EAIYGS 61
Query: 347 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILN 484
++ ++ + SK R P LPSS L ++ LTG D GFED LN
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
>03_05_0152 +
21291162-21291287,21291379-21291479,21293257-21293354,
21294016-21294068,21295465-21295659,21295812-21296084
Length = 281
Score = 37.1 bits (82), Expect = 0.011
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Frame = +2
Query: 173 NGVKIQENTFGSRDPMIAGLG-ATRPKLGFVHPLEAS-EKNYHLNEEKLNLAMLRNVQGL 346
+G +++ + D ++ G+ + + L HP++A+ K +K + G
Sbjct: 3 SGSIVKKEVGENHDVLLFGVNNSVKGDLAPQHPIQATVHKEAKFWADKKRFGA-EAIYGS 61
Query: 347 HAPMKITMERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQP-- 517
++ ++ + SK R P LPSS L ++ LTG D GFED LN ++ P
Sbjct: 62 AFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPDM 121
Query: 518 HAVIERSLGLL*LC 559
H +E++L + +C
Sbjct: 122 HHGMEKNLLKIGIC 135
>09_02_0402 +
8582235-8582360,8582452-8582552,8584328-8584425,
8585089-8585151,8586540-8586721,8586874-8587146
Length = 280
Score = 35.5 bits (78), Expect = 0.033
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +2
Query: 368 MERKFASKVGRLP-FLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAVIERSLG 544
++ + SK R P LPSS L ++ LTG D GFED LN ++ P + +
Sbjct: 69 LDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNLPQDSDSFHAPD--MHHGME 126
Query: 545 LL*LCASCKSYL 580
+L CK Y+
Sbjct: 127 VLLEIGICKKYI 138
>03_01_0224 - 1771582-1771727,1771855-1771980,1772489-1772517,
1772689-1772747,1772816-1772929,1773030-1773238,
1773347-1774087,1775678-1776238,1776295-1776419,
1778187-1778317,1779020-1779178,1779471-1779728,
1780140-1780164,1780531-1780592,1780944-1781003,
1781112-1781219,1781703-1781838,1781880-1781929,
1782024-1782096,1782209-1782345,1782441-1782527,
1782624-1782721,1783259-1783369,1783685-1783769,
1783880-1783969
Length = 1259
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 458 DIGFEDIL-NTRDLCETAGQPHAVIERSLG 544
++GF D N R L TAG HA +ER LG
Sbjct: 1227 EMGFFDTQENIRALIATAGNVHAAVERLLG 1256
>02_05_0839 -
32113992-32114210,32114321-32114484,32114612-32114708,
32115822-32115944,32116770-32117141
Length = 324
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +2
Query: 140 PPLKVKPEHDDNGVKIQENTFGSRDPMIAGLGATRPKLGFVHPLEASEKNYHLNEEKLN 316
PP++V PE + +G ++ FG+ P G + + P+E+++ + + E+ LN
Sbjct: 187 PPVEVIPEGEPDGATAEDPIFGTEVPATENHGVDQVQEDIDIPVESNDVD-PMQEDLLN 244
>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
Length = 501
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +2
Query: 374 RKFASKVGRLPFLPSSNLQHDVLTGRYIDIGFEDILNTRDLCETAGQPHAV 526
R + +GRL L S NL + R + F D+L R+L + Q HA+
Sbjct: 343 RGLPAGIGRLAALESLNLSSNFSDMRDLPASFGDLLGLRELDLSNNQIHAL 393
>08_01_0405 - 3597236-3597549,3598333-3598402
Length = 127
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -3
Query: 264 CTKPSLGLVAPKPA-IMGSRLPKVFS*ILTPLSSCSGFTLRGGSP 133
CT+P + +VAP PA + +RLP L+SCS ++ G+P
Sbjct: 36 CTRPPVSVVAPGPASVARARLPP------PSLASCSRPSVGDGAP 74
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,515,137
Number of Sequences: 37544
Number of extensions: 280620
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 555
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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