Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt20a01
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   7.0  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.2  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 492 KKKVKIETSAITVPLPAKPVTDGEK-ESTLDDY 587
           KK++K+E S +  P P    ++  K ES   DY
Sbjct: 201 KKRIKLEQSPLCPPAPRLTNSNSIKHESDNSDY 233


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +3

Query: 162 MEGKKISFGFMK 197
           +EGK+I FGF K
Sbjct: 254 VEGKRIPFGFRK 265


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 468 VRELMEDTKKKVKIETSAITVPLPAKPVTDGEKESTLDDYDS 593
           VRE + + K+K K +     V +  K    G  E+ LD +D+
Sbjct: 459 VREKIIEEKRKNKNKNLTPAVNIIVKGDVAGSVEALLDIFDT 500


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,487
Number of Sequences: 438
Number of extensions: 3709
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)