Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p19
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    31   0.24 
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     29   0.97 
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    29   0.97 
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.3  
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot...    27   3.0  
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.0  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   3.9  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    27   3.9  
SPBC354.01 |gtp1|SPBC649.06|GTP binding protein Gtp1|Schizosacch...    26   5.2  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   5.2  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    26   6.9  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    25   9.1  
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.1  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   9.1  

>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = -3

Query: 614 WYSCWNDRH---FS*QDSSFSADPSWGPTVWMIYLAGKL*PPVTL---ASPVGHPPIESH 453
           W + W++R+   F   +S   A P W   V  + +     PP ++   A P G PP  S+
Sbjct: 13  WVAQWDERYKCYFYVNESDPKAKPQWECPVRGLTIP----PPPSVDHSAPPSGPPPSYSN 68

Query: 452 SACKKGPAARC-MAPSTPPPAFS 387
           SA    PAA    A   P PA S
Sbjct: 69  SAAPATPAASASSAAPAPAPAAS 91


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +1

Query: 244 STTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAVVNAANSRLKAGGGV 408
           +T   +KE E     T+KNK+ ++ + + K  + KL+ + +          GGG+
Sbjct: 3   TTAQKIKEVEDEMAKTQKNKATAKHLGMLKAKLAKLKRELITPTGGG---GGGGL 54


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 28.7 bits (61), Expect = 0.97
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = -3

Query: 467 PIESHSACKKGPAARCMAPSTPPPAFSLELA-AFTTASISSLVMSPLKIETRSEMDL 300
           P ES ++   G     + PS+PPP FS E A A     I  L    L +E     DL
Sbjct: 16  PFESENS-SLGATPLSLPPSSPPPEFSDEAAEALVEEDIEDLDGEALDVEDEEGEDL 71


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 16/55 (29%), Positives = 31/55 (56%)
 Frame = +1

Query: 190 VDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLE 354
           +D  S YL++ + ++S  + ++ L +  K ++   K KSIS+     K +I +LE
Sbjct: 220 IDSSSNYLSRIEMLESSLAKSNSLLDSSKSEMEALKAKSISDATK-HKNEIFQLE 273


>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
           Sin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +1

Query: 211 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKG 336
           +NK++ + + K+ T  L+   + K N+ +N  ++E  + F G
Sbjct: 242 VNKARSVSNAKAPTSALRALLEHKENSSQNGPLAENFATFSG 283


>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 211 LNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAVVNAANSRL 390
           L KS G   K S     K  ++ + + E+N+  +  V + +  ITKLE +  V     ++
Sbjct: 355 LEKSIGDTLKSSIRSSPKSKKRSREDFEENEDYNAMVPVKRSRITKLESE--VYYEKRKV 412

Query: 391 KAGGGV 408
           +A GG+
Sbjct: 413 RALGGI 418


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 229 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDIT 345
           +++    TD+ K   K++I  + + +ISE++S FK  +T
Sbjct: 245 VETANFLTDEEKTLAKMRIENDSSSAISEKLS-FKQSLT 282


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +1

Query: 229 IDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKL 351
           ++S K   ++L+E  ++K+  E+N S+ +++S  KG++  L
Sbjct: 652 LESLKRENEELRE--QLKVEHEENISMQKQLSELKGELNTL 690


>SPBC354.01 |gtp1|SPBC649.06|GTP binding protein
           Gtp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 253 DDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAVVNAANSRLKAGG 402
           + ++E E     T+KNK+    + + KG + KL    +   + S  K  G
Sbjct: 5   EKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEG 54


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 178 DLENVDPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTE 294
           D+ +    S +  K+ GIDSKKS T +  E  +  I+ E
Sbjct: 875 DVSDTSDRSPFSFKAFGIDSKKSPTPEPTEMAESNISEE 913


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 503 PPVTLASPVGHPPIESHSACKKGPAARCMAPSTPPPAFSLELAAFTTASISSL 345
           P    AS    PP+ +HS    GP +   + S+ PPA      A T    SS+
Sbjct: 308 PSAYSASVSSQPPL-THSYVHPGPQSHKYSLSSGPPASLYNANALTPEESSSI 359


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 205 KYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAV 366
           K++ + + I       D  K+ EKIK+  +KNK     V++++ +I +   DA+
Sbjct: 150 KHMREFEQIKKSAMRYDRQKQKEKIKMVEQKNKRNLYLVNVWEREILRNWPDAL 203


>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 4/120 (3%)
 Frame = +1

Query: 193 DPWSKYLNKSQGIDSKKSTTDDLKEFEKIKINTEKNKSISERVSIFKGDITKLEIDAVVN 372
           D W KY +  +    K ++  DL    + +   ++  SI+E    ++ +I    I  ++ 
Sbjct: 9   DYWKKYFSNKKKPTVKNTSDIDLLHINRGRQPFDEGLSINEDSFFYRHNIHVPRIVYLII 68

Query: 373 AANSRLKAGGGVDGAIHRAAGPFLQAECD----SIGGCPTGDAKVTGGYNLPAKYIIHTV 540
            A       GG++ AI  A G + + E       +    +GDA VT        Y + ++
Sbjct: 69  VACGSFIITGGIEFAI--AYGMYKKTETSVRLWRLPDTLSGDAAVTNFVQAIVTYWVESI 126


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 503  PPVTLASPVGHPPIESHSACKKGPAARCMAPSTPP--PAFSLELAAFTTASISSLVMSP 333
            PP+ + S    PP+   ++    P +   APS PP  PA S E+ +    S +  V +P
Sbjct: 1032 PPIPVPSTA--PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAP 1088


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 651 NLRFSESSRSTHSATYS*EVSRNEYRNEPNY 743
           N RF +SSR   S T + +V+   Y   P+Y
Sbjct: 161 NTRFKQSSREFSSNTQAIDVANTPYELLPDY 191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,542
Number of Sequences: 5004
Number of extensions: 69173
Number of successful extensions: 223
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)