Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p19
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   3.1  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   5.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 485 SPVGHPPIESHSACKKGPAARCMAPSTP 402
           SP G  P  S S+    PAAR  +   P
Sbjct: 63  SPTGSSPQHSGSSASTSPAARTTSSMYP 90


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 434 PAARCMAPSTPPPAF 390
           P  RC+ P TP P F
Sbjct: 146 PRFRCIGPPTPFPRF 160


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 767  SIGKNVQNIIRFISVFVSRNFLA 699
            +  KNVQ  + F++ F  R+F++
Sbjct: 971  TFSKNVQGRVGFVTPFEHRHFIS 993


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 52  KFIGVC*NDTI*TINENHRHFGREYRNNSLGRRFHGN 162
           K I    N+TI   N  + +    Y NN+  ++ + N
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 52  KFIGVC*NDTI*TINENHRHFGREYRNNSLGRRFHGN 162
           K I    N+TI   N  + +    Y NN+  ++ + N
Sbjct: 79  KIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLYYN 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,590
Number of Sequences: 438
Number of extensions: 4992
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)