Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p16
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.31 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    29   0.54 
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz...    29   0.71 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    28   1.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce...    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.9  
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    27   3.8  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   5.0  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    26   5.0  
SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    26   6.6  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   8.8  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.8  

>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 13/65 (20%)
 Frame = +3

Query: 90  LDESENSEKYNYAISTVFAFISSIFSLRSSYE-------------CPKLVNDCSGHRAHP 230
           +D SE S +Y+     + AF   I  + +SYE             C K  NDCSGH    
Sbjct: 251 IDSSETSTRYHKRQVDMEAFGEEIEEVVASYEKNYNGRCYISEEACSKATNDCSGHGRCS 310

Query: 231 RTGQL 245
           + GQL
Sbjct: 311 KYGQL 315


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/82 (21%), Positives = 37/82 (45%)
 Frame = -1

Query: 743 PASARSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGLPINLQV 564
           P+S  S FCS    +S+ C+++   T    + L  +   N +   F +  +  L      
Sbjct: 50  PSSDISEFCSLIDFISQTCNYYHDVTADFPSELIELLQKNHTIFPFELCEKIVL-----C 104

Query: 563 ILMFCPSTTLASLVILACTFPV 498
           +++    T ++ + +L C FP+
Sbjct: 105 LVLLKNKTVISPITLLQCFFPL 126


>SPBC646.14c |orc5||origin recognition complex subunit
           Orc5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 455

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = -1

Query: 731 RSAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLY---FHVTSEYGLPINLQ 567
           ++ FC    +    C  F+   R+PS  L  V  +  +FL    F ++ E  + INLQ
Sbjct: 12  KNVFCREDQIKKLSCLLFNKDCRVPSIVLYGVASTAKTFLLRTAFDLSKEENVWINLQ 69


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 583 KPYSEVTWKYKKDELDNGTDVSAVLGSRVQLEKNEQGLDNTVLVLQNAERAD 738
           KP+ +  WK KKD +D  T V    G   +L +N+  + + V  L+  +R +
Sbjct: 375 KPFEKQFWKIKKDLMD--TVVFFQKGKFYELYENDAAIGHQVFSLKLTDRVN 424


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
 Frame = -1

Query: 716  STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTS-EYGLPINLQVILMFCPST 540
            ++STV++      SS T   ST +TS  + NSS      T+     PI    +L    ST
Sbjct: 3289 TSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLN--SST 3346

Query: 539  TLASLVILACTFPVTIQALI 480
             + S  IL  + PVT  +++
Sbjct: 3347 AITSSSILNSSTPVTSSSVL 3366



 Score = 25.4 bits (53), Expect = 8.8
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
 Frame = -1

Query: 716  STSTVLSRPCSFFSSCTRLPSTALTSVPLSNSSFLYFHVTSEYGL----PINLQVILMFC 549
            ++STV++      SS     ST +TS  + NSS     +TS  GL    PI    +L   
Sbjct: 901  TSSTVVNSSTPITSSTALNTSTPITSSSVLNSS---TPITSSTGLNTSTPITSSSVLN-- 955

Query: 548  PSTTLASLVILACTFPVT 495
             ST + S  +L  + P+T
Sbjct: 956  SSTPITSSTVLNSSTPIT 973


>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 445

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +1

Query: 520 MTKDANVVEGQNIKITCKLIGKPYSEVTWKYKKDELDNGTDVSA-VLGSRVQLEKNEQGL 696
           +T +  +++ Q I      + +P+   +W    +E  +   +S  V+G R++L+K + GL
Sbjct: 108 VTGEGGLMDAQLITAEADNLTRPHW-TSWTENSEEFPSSLVMSTGVIGQRLKLDKIQSGL 166

Query: 697 DNTV 708
           ++ V
Sbjct: 167 EHAV 170


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = -1

Query: 728 SAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 618
           SA  +TST +S     +++ + LP+++++S PLS+++
Sbjct: 393 SANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 429



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/37 (32%), Positives = 26/37 (70%)
 Frame = -1

Query: 728 SAFCSTSTVLSRPCSFFSSCTRLPSTALTSVPLSNSS 618
           SA  +TST +S     +++ + LP+++++S PLS+++
Sbjct: 507 SANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSAN 543


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = +1

Query: 166 ACGVLTSAQNSSTIAPVTEPTQELVNYEALKYIVGRPFNLNCTLAVPLDSFEIV 327
           A  ++T A ++    P T+ T ++V++  +  ++G PF  +  L++P    E+V
Sbjct: 151 AMNMVTLALSAQLSPPSTKRTVKVVSFITIGAVIGWPF--SAALSIPFILLELV 202


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 333 EEQRASRRGGRPQGAVRAPEQGAHLPDQGPQ*RGRLRQLHVRPQEPNGTYQSLDG 497
           ++Q+ S+   +PQ       Q    P Q  Q + + RQLH   Q+P  T  S +G
Sbjct: 167 QQQQQSQPQQQPQQQQHQQPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNG 221


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 548 PSTTLASLVILACTFPVTIQALICPVW 468
           PST LAS  I +   P +I+  + P W
Sbjct: 294 PSTILASQTIFSEEHPSSIEPFVAPYW 320


>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 367 LKERYELQNKGLTFQIKGRSNEDDYGNYTCGLKNQTG 477
           +KE  EL   G      G SNEDD+  + C ++   G
Sbjct: 11  MKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG 47


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 611 YFHVTSEYG-LPINLQVILMFCPSTTLASLVILACTFPVTIQ--ALICPVWF 465
           Y HV S Y  + + L +I+    +    + V++A  F   I   + ICP+WF
Sbjct: 247 YIHVFSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWF 298


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 460 LKNQTGHIKAWMVTGNVHAKMTKDANVVE 546
           +K    H +AW   G +H  +  ++ VVE
Sbjct: 321 VKENPQHFEAWKWLGRIHTLLGNESRVVE 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,321
Number of Sequences: 5004
Number of extensions: 48011
Number of successful extensions: 221
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)