Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p15
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.20c |psh3||ER chaperone SHR3 homologue Psh3|Schizosaccha...    25   3.3  
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo...    25   5.8  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    25   5.8  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    24   7.7  

>SPBC409.20c |psh3||ER chaperone SHR3 homologue
           Psh3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = -2

Query: 398 FFHSLNCIYYTIIVKLIINMYKQLITILFHNSCSHFPNFNL 276
           FF+S   +Y T ++  I+N+   ++ +   N      N +L
Sbjct: 100 FFYSSTLLYLTALILFIVNVAPSMLVVKLQNYVQFPRNMHL 140


>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
           Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 805

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 164 VYVAQNYQIEKVE-DPKALFEKAQAFVKSKLSEVQDG 271
           ++ AQ   +++V+ D   +FEK QA+V    +  Q+G
Sbjct: 721 IHKAQGQTLDRVKVDLGRVFEKGQAYVALSRATTQEG 757


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 107 LNNKMFKGLIIFGAGVYTGVYVAQNYQIEKVEDPKALFE 223
           LNN   + ++I G    T VYVA+  Q+  VE P  + +
Sbjct: 697 LNNSSHRCMMITGDNPLTAVYVAE--QVGIVEKPTLVLD 733


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 107 LNNKMFKGLIIFGAGVYTGVYVAQNYQIEKV 199
           +NN+ ++   + G G +  VY+ QN   EK+
Sbjct: 27  INNERYRIQKLLGEGGFAFVYLVQNVSNEKL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,226,547
Number of Sequences: 5004
Number of extensions: 17911
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)