Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p15
         (402 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.9  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   6.9  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   6.9  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   6.9  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   6.9  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    20   9.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 371 NKYNSNCEK 397
           N YN+NC+K
Sbjct: 103 NNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 371 NKYNSNCEK 397
           N YN+NC+K
Sbjct: 103 NNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 371 NKYNSNCEK 397
           N YN+NC+K
Sbjct: 103 NNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 371 NKYNSNCEK 397
           N YN+NC+K
Sbjct: 103 NNYNNNCKK 111


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 371 NKYNSNCEK 397
           N YN+NC+K
Sbjct: 345 NNYNNNCKK 353


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 119 MFKGLIIFGAGVYTG 163
           +FKG +  GAG+  G
Sbjct: 87  LFKGFVHLGAGLAVG 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,344
Number of Sequences: 438
Number of extensions: 1277
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)