Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1p10
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0005 + 21442819-21442916,21443053-21443119,21443226-214432... 33 0.26
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 29 5.7
02_04_0454 + 23064081-23064139,23064297-23064366,23064553-230658... 28 7.5
01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804 28 7.5
05_04_0349 + 20492334-20492494,20493245-20493324,20493951-204940... 28 9.9
03_01_0437 + 3390099-3392570 28 9.9
02_05_1298 - 35542250-35542831,35543218-35543410,35543511-355438... 28 9.9
01_06_0787 - 31999632-32000045,32000128-32000214,32000295-320005... 28 9.9
>05_05_0005 +
21442819-21442916,21443053-21443119,21443226-21443291,
21443368-21443414,21443480-21443543,21443627-21443707,
21443781-21443823,21443912-21443961,21444262-21444343,
21445045-21445120,21445451-21445558,21445782-21445833,
21445911-21446570,21446652-21448067
Length = 969
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 462 ENNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHS----DSSTKWWRN 605
ENN ++S + L + V N NQ + SSES+ P + ++S D S+ W N
Sbjct: 429 ENNSPVSSSGVKLTSAVSNKNQAEQSSESSRPHSGVSYSSKFGDISSNGWTN 480
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +3
Query: 603 NDIAKLKEKNQAKQSTQNNSCCQQALNPPCDVTIDELASYFE---TLVHIPKKMSSMAEM 773
+D AKL + + ++ NN+ +Q P DV + + S E + V +PK+ S +A +
Sbjct: 751 DDSAKLTDAHDQREEITNNNDEKQVETPKLDVLEESMGSPKEDNKSRVEVPKEDSDLASV 810
Query: 774 MYI 782
+
Sbjct: 811 QVV 813
>02_04_0454 +
23064081-23064139,23064297-23064366,23064553-23065815,
23065946-23066515
Length = 653
Score = 28.3 bits (60), Expect = 7.5
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 555 PPTKSTHSDSSTKWWRNDIAKL 620
P HS S++ WW +D+A+L
Sbjct: 175 PAALPAHSSSASPWWAHDVAEL 196
>01_06_0101 + 26443080-26443172,26444063-26445139,26445226-26445804
Length = 582
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -3
Query: 377 IVFLLTDTPVKKSLL*HTCTFFLNYSCEHTPSWIHG 270
I+ LL TP +SL H C F E+ +W+ G
Sbjct: 422 ILLLLDATPALESLHVHVCCFLTTLLTENACTWMFG 457
>05_04_0349 +
20492334-20492494,20493245-20493324,20493951-20494020,
20494089-20494139,20494535-20494649,20495401-20496268,
20496453-20496628,20500217-20500276,20501617-20501694,
20501951-20502008,20502658-20502720,20503397-20503453,
20503599-20503661,20504081-20504454
Length = 757
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +3
Query: 408 ILQCCDNNDISKKC--SLPTENNETLNSDTLNLCTLVQNCNQLKISSESNEPP--TKSTH 575
+L+ CD+ + K +++ LNSD +CTL + QL ++++ + P T
Sbjct: 47 LLRFCDHRNCHKAYHPECVDKDDSFLNSDEQFICTLFCSAIQLMVTAQISRSPRQTMRYR 106
Query: 576 SDSSTKWWRNDIAK 617
+ T W R +K
Sbjct: 107 GNRLTTWVREPPSK 120
>03_01_0437 + 3390099-3392570
Length = 823
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 538 DIFNWLQFCTNVHKFNVSLFNVSLFSVGRLHFFDI 434
+IFNW + H+ NV +NV L +VGR +D+
Sbjct: 126 EIFNWFRRRRR-HEVNVIHYNVVLCAVGRARRWDL 159
>02_05_1298 -
35542250-35542831,35543218-35543410,35543511-35543827,
35544144-35544186,35545845-35545900,35546028-35546102,
35546249-35546345,35546422-35546546,35547063-35547167,
35547295-35547432,35547758-35547831,35547995-35548065,
35548168-35548363,35548482-35548572,35549264-35549342,
35549431-35549491,35549745-35549814,35549913-35549987,
35550119-35550194,35550403-35550489,35550744-35550880,
35551000-35551063,35551351-35551415
Length = 958
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/60 (30%), Positives = 26/60 (43%)
Frame = +3
Query: 300 RVVKKKCTCMSQKRFFNRGVSKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTENNETL 479
RV+ KC ++ V K N++ + VL IL+ D +D K C L TL
Sbjct: 581 RVIDVKCWYLNANGLTPSLVPGKDRLNDLPDDVVLNILERLDTSDAMKTCILSKNMRATL 640
>01_06_0787 -
31999632-32000045,32000128-32000214,32000295-32000584,
32000670-32000844,32000930-32001142,32001227-32001328,
32001418-32001822,32001922-32002134,32002312-32002357,
32002602-32002867,32003936-32004012,32004095-32004170,
32004339-32004418,32004945-32005036,32005132-32005171,
32005301-32005400,32005815-32005962,32006071-32006153,
32006207-32006383
Length = 1027
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/61 (22%), Positives = 28/61 (45%)
Frame = +3
Query: 519 CNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQAKQSTQNNSCCQQALNPPCDV 698
C + + S++ +T +D+ + R + AKLK + + + T S +PPC
Sbjct: 430 CLNCGVVATSSDAAAAATAADTREQRLRLEKAKLKAEIERLRGTPGKSAADGIASPPCSA 489
Query: 699 T 701
+
Sbjct: 490 S 490
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,442,680
Number of Sequences: 37544
Number of extensions: 404990
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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