Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p10
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.81 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.3  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   4.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   7.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 26/118 (22%), Positives = 54/118 (45%)
 Frame = +3

Query: 285 RSVFTRVVKKKCTCMSQKRFFNRGVSKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTE 464
           +S+  R + +  +    KRF +  V ++  +++  + P   +L    + D +K+ S   +
Sbjct: 9   KSLSQRKIIRSRSRRYSKRFSSSIVDRRSPSSS--RSPSPSLLTSQPHQDHNKEKS---K 63

Query: 465 NNETLNSDTLNLCTLVQNCNQLKISSESNEPPTKSTHSDSSTKWWRNDIAKLKEKNQA 638
           NN   N DT  L       NQL+I S++++        +      RND+ + + K ++
Sbjct: 64  NNHHCNQDTEKL-------NQLEIESDNSKEVNDKKEENFIVDRLRNDLFECENKEKS 114


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 423 DNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQLKISSESNE 554
           ++N I    SL + + E L  D LNL T + + +    SSE N+
Sbjct: 343 NSNQIVSDNSL-SSSEEKLKQDILNLRTDISSSSSSISSSEEND 385


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 219 FLTFPFQIPKL--HLLWSCLLAFKMLL 145
           FL +P  + +L    +WSCL  F ++L
Sbjct: 360 FLVYPSAVLELPGSSIWSCLFFFMLIL 386


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -2

Query: 219 FLTFPFQIPKL--HLLWSCLLAFKMLL 145
           FL +P  + +L    +WSCL  F ++L
Sbjct: 413 FLVYPSAVLELPGSSIWSCLFFFMLIL 439


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 306 VKKKCTCMSQKRFFNRGVSKKKYNNNILKEPVLKILQCCDNNDISKKC 449
           V +K   M +K    R    KK      KE  ++++  C N D S KC
Sbjct: 75  VLEKFNVMDKKNGKIRYNLLKKVIPEAFKEIGVEMIDSCSNVDSSDKC 122


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 18/66 (27%), Positives = 23/66 (34%)
 Frame = +3

Query: 348 NRGVSKKKYNNNILKEPVLKILQCCDNNDISKKCSLPTENNETLNSDTLNLCTLVQNCNQ 527
           N  +  KK+NN I     L  L    N   S   S+    N   N D      +    N 
Sbjct: 376 NNDLDTKKWNNKISALRALNDLYNVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNND 435

Query: 528 LKISSE 545
           L I+ E
Sbjct: 436 LSINEE 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,658
Number of Sequences: 438
Number of extensions: 5633
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)