Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p04
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0168 + 1179292-1180354,1180880-1180923                           29   1.3  
03_02_0924 + 12429764-12430120,12430562-12430637,12430803-124308...    29   1.3  
12_02_1118 + 26210322-26212559                                         27   3.8  
05_06_0151 - 25999366-26000044,26004820-26005637                       27   5.1  
03_05_0955 + 29168771-29170507                                         27   5.1  
03_01_0149 - 1175689-1176258,1176345-1176509,1176631-1177539,117...    26   8.9  

>07_01_0168 + 1179292-1180354,1180880-1180923
          Length = 368

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +3

Query: 210 NVWSAYEKHGRNVFKEDGLHLILVDCLNGKIAITQVANLLLCLYANEAV 356
           N W    +HGR +F+   + L + D + G +   +     LC +A  AV
Sbjct: 96  NCWPLDCRHGRALFQSSNVELTIWDPMTGDVRRQREPYGTLCTFATAAV 144


>03_02_0924 +
           12429764-12430120,12430562-12430637,12430803-12430849,
           12431850-12431962,12432056-12432129,12432258-12432353,
           12432440-12432559,12432660-12432893,12433486-12433634,
           12434145-12434301,12434387-12434542,12435359-12435735,
           12435871-12436020,12437071-12437253,12437440-12437643,
           12437869-12437975,12438253-12438406,12438796-12438917,
           12439541-12439787
          Length = 1040

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +3

Query: 54  FKMLKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDKDARVTAAIASNVWSAYEK 233
           F  L    L EVL QA    +E ++ +      L   GYNDK + + ++I +   S   K
Sbjct: 638 FVNLLKDELNEVLYQAYVAKLETSMSVVGSNLELKLYGYNDKLSTLLSSILAASQSFSPK 697

Query: 234 HGR-NVFKED 260
             R  V KED
Sbjct: 698 SDRFEVIKED 707


>12_02_1118 + 26210322-26212559
          Length = 745

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 264 LHLILVDCLNGKIAITQVANLLLCLYANEAVGFGILKEKK 383
           L L++V+   GKI  T + +LL+ +   EAV  G L   K
Sbjct: 286 LVLVIVNACLGKIGGTVITSLLVKIPVREAVTLGFLMNTK 325


>05_06_0151 - 25999366-26000044,26004820-26005637
          Length = 498

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
 Frame = +3

Query: 129 LLNHQ--GALLAYSGYNDKDARVTAAIASNVWSAY--EKHGRNVFKED-GLHLILVDCLN 293
           +L+H+  GA + +SG+N     +TA +    W  Y  +K  + +  ED G+ + +V    
Sbjct: 377 VLHHRATGAFVTHSGWNSVLEGITAGVPMLCWPLYSEQKMNKVLMVEDMGIAVEMVGWQQ 436

Query: 294 GKIAITQVANLLLCLYANEA 353
           G +   +V   +  +  +EA
Sbjct: 437 GLVTAEEVEAKVRLVMESEA 456


>03_05_0955 + 29168771-29170507
          Length = 578

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = -1

Query: 364 PKPTASFA*RHSNKLATCVIAIFPFKQSTSIKCSPSSLKTFLPCFS*ADQTLLAIAAVTL 185
           P+P A+ A       AT V    P   S    CS   L++ L C S A  T   +AA  L
Sbjct: 171 PRPEAAPALLPQPAAATPVACSSPSPSSADASCSAPILQSLLSC-SRAAATDPGLAAAEL 229

Query: 184 ASL 176
           AS+
Sbjct: 230 ASV 232


>03_01_0149 -
           1175689-1176258,1176345-1176509,1176631-1177539,
           1178179-1178378,1178505-1178605,1178747-1179369,
           1179451-1179546,1179637-1179798,1179889-1180068,
           1180173-1180323,1180408-1180641,1180753-1180913,
           1181041-1181163,1181261-1181421,1181655-1181877,
           1181952-1182346,1182461-1182671,1183536-1184522
          Length = 1883

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = +1

Query: 118 KTLCC*IIKVHF*LILVTMIRMLESLLQSLVMSGQLMKNTAEMFLKKMDYI 270
           K++C  ++K +  ++ V ++  +  + Q LVM+ Q++ N     + KMD I
Sbjct: 302 KSVCDKMLKENKKMLAVFLVPKVPLVYQVLVMTAQILLNILRHSIIKMDAI 352


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,567,787
Number of Sequences: 37544
Number of extensions: 133897
Number of successful extensions: 337
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)