Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p04
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical ...    66   1e-11
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    28   2.0  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    28   2.0  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    28   2.0  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    28   2.0  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    28   2.0  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    28   2.0  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    28   2.0  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    27   3.4  

>AC024880-7|AAF60911.1|  124|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.7 protein.
          Length = 124

 Score = 65.7 bits (153), Expect = 1e-11
 Identities = 45/110 (40%), Positives = 65/110 (59%), Gaps = 3/110 (2%)
 Frame = +3

Query: 60  MLKPKALTEVLSQANTGGVENTLLLNHQGALLAYSGYNDK--DARVTAAIASNVWSAYEK 233
           MLK KAL +VL Q NT GV+ + L N +G LLAY G   K   + V++A+ ++VW+A E+
Sbjct: 1   MLKQKALVDVLGQVNTSGVDGSWLFNKEGLLLAYVGSEQKAVASNVSSALIASVWAALER 60

Query: 234 HGRNVFKEDGLHLILVDCLNGKIAITQVA-NLLLCLYANEAVGFGILKEK 380
              N  KE     ILV   NG I  T VA  +LL + A+++   G+++ K
Sbjct: 61  RA-NDLKE----TILV-LENGVIGCTLVARTMLLAVKADKSADLGMVRAK 104


>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform g protein.
          Length = 1604

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1155 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1186


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform f protein.
          Length = 1818

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1369 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1400


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1505 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1536


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1554 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1585


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1546 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1577


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1557 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1588


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 275  TSRLFKWENCNHTSCQFITVSLCE*GCWFWHS 370
            T R F +  C   S +F+TVS CE  C+ ++S
Sbjct: 1558 TCRPFAYSGCGGNSNRFMTVSQCENLCFAFNS 1589


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 269 FNTSRLFKWENCNHTSCQFITVSLCE*GCWFWHSERKKK 385
           F T R+FKW       C  +T +LCE    ++H + K K
Sbjct: 119 FETLRIFKW-------CHDLTRTLCELNVTYYHGDVKAK 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,865,913
Number of Sequences: 27780
Number of extensions: 129131
Number of successful extensions: 274
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)