Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1p04
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.30 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          24   0.53 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      24   0.53 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   1.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   6.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    20   8.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +3

Query: 51  AFKMLKPKALTEVLSQANTGGVENTLLLNH---QGALLAYSGYNDKDARVTAAIASNVWS 221
           + +  KP  LTE L   +   +E  ++L H   + ++ A     D   + T  ++++  +
Sbjct: 630 SMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTDPNT 689

Query: 222 AYEKHGRNVFKEDGLH 269
            ++ +  +  K  G H
Sbjct: 690 HFQVNQSHGIKRSGSH 705


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 174 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 275
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.2 bits (50), Expect = 0.53
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 174 DKDARVTAAIASNVWSAYEKHGRNVFKEDGLHLI 275
           +K++R++AAI S      +    N++ E GL+++
Sbjct: 329 NKESRISAAIDSGYILNNDGKWHNIYSEKGLNIL 362


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 324 LLLCLYANEAVGFGILKEKK 383
           L LCL   +A+ FG++ E K
Sbjct: 181 LALCLAVPQAIQFGVVYENK 200


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = +3

Query: 36   IQQ--HQAFKMLKPKALTEVLSQANTG---GVENTLLLNHQGALLA 158
            IQQ  HQ  +  + K L +VL+ +N+G    VEN  LL  +G  LA
Sbjct: 1098 IQQSPHQQQQQQQQKILAKVLTSSNSGQLISVEN--LLAQKGLKLA 1141


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +2

Query: 8   NFVLSHFHVNPTAPS 52
           N+ L H H N   PS
Sbjct: 168 NYTLGHHHQNGATPS 182


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 231 KHGRNVFKEDGLHLILVDCL 290
           KH + + +  G+H +++D L
Sbjct: 285 KHEQRLLRNVGVHTVVLDLL 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,820
Number of Sequences: 438
Number of extensions: 1426
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)