Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1o16
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 307 1e-84
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 112 6e-26
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 87 2e-18
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 78 2e-15
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 75 1e-14
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 62 6e-11
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 40 4e-04
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 40 4e-04
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 38 0.001
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 37 0.003
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 33 0.056
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 31 0.23
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 31 0.23
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 31 0.23
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.23
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.53
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 29 0.70
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 1.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.8
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.9
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 26 6.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 6.5
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 6.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 6.5
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 8.6
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 307 bits (754), Expect = 1e-84
Identities = 140/192 (72%), Positives = 175/192 (91%), Gaps = 1/192 (0%)
Frame = +1
Query: 142 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 318
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 319 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 498
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 499 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVEL 678
LEPGCSVLL+HK ++VG+L DDTDPM++VMKL+KAP E+YADIGGL++QIQEIKE+VEL
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVEL 209
Query: 679 PLTHPEYYEEMG 714
PLTHPE YEEMG
Sbjct: 210 PLTHPELYEEMG 221
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = +2
Query: 704 KKWGIKPPKGVIL 742
++ GIKPPKGVIL
Sbjct: 218 EEMGIKPPKGVIL 230
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 112 bits (269), Expect = 6e-26
Identities = 56/151 (37%), Positives = 94/151 (62%)
Frame = +1
Query: 262 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 441
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 442 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETY 621
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+++ ++ P +Y
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSY 133
Query: 622 ADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
AD+GGLD Q QE++E+VELPLT + Y ++G
Sbjct: 134 ADVGGLDVQKQEVREAVELPLTQGDLYRQIG 164
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 87.4 bits (207), Expect = 2e-18
Identities = 47/154 (30%), Positives = 83/154 (53%), Gaps = 4/154 (2%)
Frame = +1
Query: 265 ERIKDYLLMEEEFIRNQERLKPQEEKIEEE----RSKVDDLRGTPMSVGNLEEIIDDNHA 432
++I+D L + +N RL+ Q + R ++ L+ VG + + + N
Sbjct: 22 QKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVGEVIKTMGKNKV 81
Query: 433 IVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQ 612
+V ++ V I +D +++P V L + + ++ +L + DP+VS+M +EK P
Sbjct: 82 LVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPD 141
Query: 613 ETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
TY +GGL+ QI+EIKE +ELP+ HPE +E +G
Sbjct: 142 STYEMVGGLEKQIKEIKEVIELPVKHPELFESLG 175
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 77.8 bits (183), Expect = 2e-15
Identities = 45/155 (29%), Positives = 79/155 (50%), Gaps = 4/155 (2%)
Frame = +1
Query: 262 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 429
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 430 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAP 609
IV S G + V + VD+ L G V L+ ++ +L + DP+V M +E
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPG 127
Query: 610 QETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
++A +GGL+ QI+E++E +ELPL +PE + +G
Sbjct: 128 DISFAGVGGLNEQIRELREVIELPLKNPELFLRVG 162
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 74.5 bits (175), Expect = 1e-14
Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Frame = +1
Query: 277 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 420
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 421 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 573
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 574 PMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
V M++++ P E Y+DIGGL QI+E+ E++ LP+ + + ++G
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLG 215
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 62.5 bits (145), Expect = 6e-11
Identities = 32/103 (31%), Positives = 56/103 (54%)
Frame = +1
Query: 406 EEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVS 585
E+ + N +++ ++ VS+ V +E G V + +A+ L DP V+
Sbjct: 107 EQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVGCDRNKYAIQLPLPPKIDPSVT 166
Query: 586 VMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
+M++E+ P TY D+GG QI+ ++E VELPL PE + ++G
Sbjct: 167 MMQVEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLG 209
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 39.9 bits (89), Expect = 4e-04
Identities = 17/38 (44%), Positives = 26/38 (68%)
Frame = +1
Query: 601 KAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
++P ++DIGG + Q++KESVE PLTH E + +G
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLG 578
Score = 36.3 bits (80), Expect = 0.005
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +1
Query: 616 TYADIGGLDTQIQEIKESVELPLTHPEYYE 705
T++ IGGL QI +I++ VELP +PE ++
Sbjct: 277 TFSSIGGLQAQIAQIRDIVELPFQNPELFK 306
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 39.9 bits (89), Expect = 4e-04
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +1
Query: 619 YADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
Y DIGG Q+ +I+E VELPL HP+ ++ +G
Sbjct: 223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIG 254
Score = 32.7 bits (71), Expect = 0.056
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Frame = +1
Query: 400 NLEEIIDDNHAIVSTSVGS-------EHYVSILSFVDKDQLEPGCSVL--LNHKVHAVVG 552
+LE+I + H V + + S + + +D D+ E VL L +
Sbjct: 415 DLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNFRF 474
Query: 553 VLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
LG ++P + + P + DIGGL+ +E++E+V++P+ + E + G
Sbjct: 475 ALGS-SNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFG 527
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 622 ADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
+DIGGLD I E+ E V +P+ HPE Y+ G
Sbjct: 174 SDIGGLDDCINELLELVAMPIKHPEVYQYTG 204
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 616 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGNQ 720
++ +GGLD I ++KE V LPL +PE ++ Q
Sbjct: 264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQ 298
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 32.7 bits (71), Expect = 0.056
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 616 TYADIGGLDTQIQEIKESVELPLTHPEYYEEMGNQTS 726
++ DIGG+D + ++ + V PL +PE ++ G S
Sbjct: 87 SFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLS 123
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 30.7 bits (66), Expect = 0.23
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +1
Query: 619 YADIGGLDTQIQEIKESVELPLTHPEYYEEMG 714
+AD+ G+D +EI E V+ L +P++YE +G
Sbjct: 295 FADVAGVDEAKEEIMEFVKF-LKNPKFYERLG 325
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 30.7 bits (66), Expect = 0.23
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 11/195 (5%)
Frame = +1
Query: 151 PIPTRVGKKKRKAKGP----DAALKLPQVTPHTRC-------RLKLLKLERIKDYLLMEE 297
PIP+R G++KRK +GP L++ + R R KL + +Y L +
Sbjct: 208 PIPSRRGRRKRKMRGPILPVKKNLRVKKAMSPLRAERNSPDFRRKLRSRDNRPNYHLF-D 266
Query: 298 EFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSIL 477
+ P KI K+ + +G + D + +S SE +
Sbjct: 267 YYNEIASSPNPSTTKITYNPPKLPMKDFATLPIG-YQSTCDSDETSELSSTSSEQTSDVE 325
Query: 478 SFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSVMKLEKAPQETYADIGGLDTQIQE 657
+ L G S + + + + D + S + IGGL+ I +
Sbjct: 326 GLNAYNNL--GASSDIENAPSSQLHFGHIDEKTIRSTDPFANRENLDFNSIGGLEDIILQ 383
Query: 658 IKESVELPLTHPEYY 702
+KE V LPL +PE +
Sbjct: 384 LKEMVMLPLLYPEVF 398
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 30.7 bits (66), Expect = 0.23
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = +1
Query: 565 DTDPMVSVMKLEKA------PQETYADIGGLDTQIQEIKESVELPLTHPEYYEE 708
D D ++ ++ EK+ P+ + DIGGL+ ++++++LPL PE + +
Sbjct: 630 DVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQ 683
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 244 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 423
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.53
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 229 PHTRCRLKLLKLERIKDYLLM 291
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 577 MVSVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYY 702
+ S + +EK P + DI GL+ + +KE+V LP+ P+ +
Sbjct: 115 LTSAILVEK-PNVRWDDIAGLENAKEALKETVLLPIKLPQLF 155
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 619 YADIGGLDTQIQEIKESVELPLTHPEYYE 705
++DI GLD +KE+V P PE ++
Sbjct: 378 WSDIAGLDDAKNSLKEAVIYPFLRPELFQ 406
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 292 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 390
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 313 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 489
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 490 KDQLEPGCS 516
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 159 YTSW*KEKES*GTRCGSQASASHASYKMSTQVVKTRKNKRLFVDGRGVHP*SRTLEA-TG 335
Y + +EK+ C S A +++ Q +KNK D +H SR LE+ G
Sbjct: 151 YLTLSREKQDQAIACVSDTVIPEAKWRIRVQTRFLKKNKSSLFDNPTIH--SRQLESMAG 208
Query: 336 RE 341
R+
Sbjct: 209 RK 210
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 6.5
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 259 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 429
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 430 AI 435
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 214 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 393
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 250 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 366
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 553 VLGDDTDPMVS-VMKLEKAPQETYADIGGLDTQIQEIKESV 672
VL D D + + +LEK ++ A + L T+I E+K +
Sbjct: 1278 VLRKDNDAKLGKIQELEKEVEKLNASLNPLQTEINELKAEI 1318
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,139
Number of Sequences: 5004
Number of extensions: 55192
Number of successful extensions: 214
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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