Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o13
         (807 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    30   0.029
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.83 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    24   1.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    23   2.5  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.3  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   4.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.8  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 29.9 bits (64), Expect = 0.029
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 704  DDNNVHRNIFGETYGSSEMTGQSNEQMKNR 615
            D+N  H +IFG T  ++E+  +S E  +NR
Sbjct: 1109 DENRYHEDIFGITLRTAEVHNRSRETARNR 1138


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
 Frame = +2

Query: 611 CFDSSFARCSGPSFPSSHTS--PRKCFCERCYRQ-EKHTD 721
           C        SG +    H     R+C CE  Y+Q E HT+
Sbjct: 301 CVSGEHLSVSGGALNDCHAEVVARRCLCEYLYKQLELHTE 340


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 192 VQAEGKYAIDSPGSPTAPEIPPE 260
           V  E  + +     PTAP IPPE
Sbjct: 90  VADENGFQVQGSHIPTAPPIPPE 112


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 554 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 643
           RY+       CG D F +    +S+  C G
Sbjct: 192 RYVPEGNMTACGTDYFNRGLLSASYLVCYG 221


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = +2

Query: 554 RYIKTSTKMECGFDTFKKYCFDSSFARCSG 643
           RY+       CG D F +    +S+  C G
Sbjct: 68  RYVPEGNMTACGTDYFNRGLLSASYLVCYG 97


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 13/48 (27%)
 Frame = -2

Query: 257 RGNLWCSWTA-------------WRINSIFPFSLYILNFFNPFFAPYC 153
           RG+LW SW               W +N+     L   +FF  FF  YC
Sbjct: 384 RGDLWISWEEGMKVFDELLLDADWSVNAGMWMWLSCSSFFQQFFHCYC 431


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/35 (22%), Positives = 16/35 (45%)
 Frame = -1

Query: 138 KRTLFPLFWEAQEYEVILGVVKTFRNENTYYINTY 34
           KR      W  +EY++    +  F+N N + +  +
Sbjct: 143 KREFMQKIWPFKEYQMNGNNITNFKNSNIFQLKQH 177


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 14/60 (23%), Positives = 24/60 (40%)
 Frame = +2

Query: 554 RYIKTSTKMECGFDTFKKYCFDSSFARCSGPSFPSSHTSPRKCFCERCYRQEKHTDPTIS 733
           R + +  +   G    K++   S+   CSG +       PRK    +C   +K   P +S
Sbjct: 265 RQLNSDVQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPMLQKLEKPVLS 324


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,212
Number of Sequences: 438
Number of extensions: 4450
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)