Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o12
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|...    28   1.8  
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos...    28   1.8  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    27   2.3  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    27   4.1  

>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = +2

Query: 446 VDEIAKAVISSSNALPIPQYIDVYVAVGQLVGDNDIGVANKAILITS 586
           VD I + +++    +     +D+  ++G+ + DN+I V  KA+L+ S
Sbjct: 24  VDRIVEEIVTDRMGI-----VDLVTSIGEYLTDNNISVRAKAVLLLS 65


>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 557 RLYHYHQQADQQLHTHQYTVVLGGH 483
           R+Y Y Q+ D++ +TH   V+ G H
Sbjct: 232 RIYKYLQEYDEKTNTHSLIVLCGDH 256


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -1

Query: 363 ENFSKHSVSTSHIKSTRCLSKMLKHWSILDNPTSRIVSEISVGAETNNVL 214
           E FS   ++T H K  +C  +M + W + D  T     + ++G +++N +
Sbjct: 199 EKFSHVPLNTGHWKYKKCDKRMPQEW-LADATTLTSKKKTTIGKQSHNTV 247


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1158

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 16/154 (10%)
 Frame = +2

Query: 212  LKTLLVSAPTEISETILEVGLSKILQCFNIF--------DRHLVDLICEVLTLCFEKFS- 364
            L T+L      I    L +GL+ +  CFN F         R L+D    V   CF   + 
Sbjct: 965  LITILEKCDNPIIRNNLVIGLADLTVCFNHFIDEISEYLYRRLMDEESSVKKTCFMTLAF 1024

Query: 365  ---PGEV-IKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSSNALPIPQYIDVYVAVGQ 532
                G++ +K   G     L  E+A +  LA   +     ++ +      +ID++  + +
Sbjct: 1025 LILAGQIKVKGQLGIMARSLEDEDARISDLA--RMFFTDFAAKDNSVYNNFIDIFSVLSR 1082

Query: 533  LVGDNDIGVAN-KAIL--ITSNLPEEAYTKVLEE 625
               + D   A  K I+  +TS + +E +TK L E
Sbjct: 1083 SAEEQDEDDAKFKRIIRFLTSFIEKERHTKQLAE 1116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,502
Number of Sequences: 5004
Number of extensions: 61312
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)