Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o12
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0938 - 12563250-12563681,12564098-12564514,12565333-125654...    30   2.5  
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203...    28   7.5  
10_08_0977 - 21985149-21985277,21985348-21985722,21985824-219858...    28   9.9  
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990...    28   9.9  
04_04_1397 - 33230416-33230742,33230852-33231007,33231130-332315...    28   9.9  

>03_02_0938 -
           12563250-12563681,12564098-12564514,12565333-12565477,
           12565574-12565722,12565836-12565948,12566423-12566458,
           12566558-12566816
          Length = 516

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 374 VIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSS--NALPIPQYIDVYVAVGQLVGDN 547
           ++K F GN  +      A  R++      K   +SS  N++P    +D   +      D+
Sbjct: 229 ILKGFEGNHPFHNYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSSDDGTTSDH 288

Query: 548 DIGVANKAILITSNLPEEAY 607
           D    N + +I S++PE++Y
Sbjct: 289 DEEDLNSSSIIGSSVPEDSY 308


>11_01_0268 -
           2029007-2029464,2029521-2029615,2030815-2031077,
           2031154-2031279,2031404-2032996
          Length = 844

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
 Frame = +2

Query: 284 LQCFNIFDRHLVDLICEVLT---LCFEKFSPG-EVIKSFTGNFMYLLRHENAHVRRLAVD 451
           L C  I D +L  L+C+ ++   L    FS G E I+S +  F+ + R   +H+      
Sbjct: 417 LACCRISDENLFALVCQCVSLRELDIGMFSEGKERIRSESLKFLQIWRSSVSHITIQWAP 476

Query: 452 EIAKAVISSSNAL 490
           ++ K +I ++  +
Sbjct: 477 KLEKVIIGAAQGM 489


>10_08_0977 -
           21985149-21985277,21985348-21985722,21985824-21985874,
           21985964-21986189,21986289-21986359,21986430-21986549,
           21986641-21986835,21986921-21986985,21987894-21987984,
           21988700-21988761,21988854-21988904,21989172-21989273,
           21989873-21989980,21990071-21990134,21990246-21990392
          Length = 618

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +2

Query: 314 LVDLICEVLTLCFEKFSPGEVIKSFTGN--FMYLLRHENAHVRRLA 445
           LVD+    LT+ F +  P EV K+ TGN     + R+ +AH RR+A
Sbjct: 485 LVDMESAYLTVEFFRKLPQEVDKTGTGNPSTPSVDRYADAHFRRIA 530


>10_08_0585 -
           18998013-18998306,18998448-18998630,18999048-18999089,
           18999226-18999495,18999903-19000454,19000546-19000770,
           19001435-19001640,19001738-19001936,19002166-19002381,
           19002887-19002991,19003127-19003243,19003366-19003548,
           19004292-19004468,19004714-19004816,19005066-19005523
          Length = 1109

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 24/79 (30%), Positives = 40/79 (50%)
 Frame = +2

Query: 173 LQTDEDIPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNIFDRHLVDLICEVLTLCF 352
           L+ D D+P  + ++  LL++   + S+TI+    +K +    I  R    L  EVL+   
Sbjct: 283 LEEDMDVPEIVEEIIDLLLTGLRD-SDTIVRWSAAKGVG--RITARLTPALSEEVLSSIL 339

Query: 353 EKFSPGEVIKSFTGNFMYL 409
           + FSPGE   S+ G  + L
Sbjct: 340 QLFSPGEGDGSWHGGCLAL 358


>04_04_1397 -
           33230416-33230742,33230852-33231007,33231130-33231543,
           33234177-33234307,33235076-33235202,33235709-33236209,
           33237624-33237935,33238690-33238719
          Length = 665

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 170 RLQTDEDIPSAMNQLKTLLVSAPTEISETILEVGLSKI 283
           R+ T+  +P  +NQLK+LLV+    + E  L  GL+ +
Sbjct: 412 RMLTNLRVPGHLNQLKSLLVAICPLLREIKLSCGLTAL 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,911,524
Number of Sequences: 37544
Number of extensions: 321825
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)