Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o12
         (801 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical ...    31   1.3  
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ...    31   1.3  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    30   2.2  
AF077534-7|AAK71376.1|  319|Caenorhabditis elegans Prion-like-(q...    29   5.1  
Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>AF077533-2|AAP40529.1|  972|Caenorhabditis elegans Hypothetical
           protein F54G2.1b protein.
          Length = 972

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 302 FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVD 451
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++
Sbjct: 716 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAIN 765


>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
           protein F54G2.1a protein.
          Length = 1126

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 302 FDRHLVDLICEVLTLCFEKFSPGEVIKSFTGNFMYLLRHENAHVRRLAVD 451
           + R LVD+ICE++T+  +K   G   + FT      +  +  H+   A++
Sbjct: 700 YTRQLVDVICEIVTVYTQKIISGLEAEGFTQELQAFIPSQLLHLLCAAIN 749


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -3

Query: 568 FVSNAYIIITNKLTNSYIHINILWYWEGIGA*YHCFSNLIYSKSTNMCI 422
           FVS A ++  +++T+ Y+H+N   YW  I   + C  +++YS   N  I
Sbjct: 120 FVS-AVVLSVHRITSVYLHMNNDKYWNLIFI-FFCLGSILYSCICNSLI 166


>AF077534-7|AAK71376.1|  319|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 48
           protein.
          Length = 319

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -2

Query: 548 HYHQQADQQLHTHQ 507
           HYHQQ  QQ H HQ
Sbjct: 47  HYHQQQQQQQHAHQ 60


>Z79601-3|CAB01883.2|  640|Caenorhabditis elegans Hypothetical
           protein K09A9.1 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 22/104 (21%), Positives = 44/104 (42%)
 Frame = +2

Query: 188 DIPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNIFDRHLVDLICEVLTLCFEKFSP 367
           D  S   Q+K  + + PTE    +++V L +I Q F  F++ +     +       +   
Sbjct: 515 DFRSIQEQMKRRIETKPTEYQTLVMQVRLQQINQLF--FEKEVSQAQKQHRAPRLVQLKC 572

Query: 368 GEVIKSFTGNFMYLLRHENAHVRRLAVDEIAKAVISSSNALPIP 499
            ++ K            E+ H  +  VD++   ++S +N+L  P
Sbjct: 573 SDISKELLLPGDIYPISEHYHPSQQPVDKVVYKLLSDANSLAFP 616


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,893,910
Number of Sequences: 27780
Number of extensions: 333806
Number of successful extensions: 898
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)