Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o12
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   1.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   1.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.9  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              23   2.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = +2

Query: 140  VAEQLRDLITRLQTDEDIPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNIFDR 310
            V + +   +T  QT+ED+P +   +K ++ S        +  +  + I+  +N++ R
Sbjct: 1196 VGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLYTR 1252


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 12/57 (21%), Positives = 28/57 (49%)
 Frame = +2

Query: 140  VAEQLRDLITRLQTDEDIPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNIFDR 310
            V + +   +T  QT+ED+P +   +K ++ S        +  +  + I+  +N++ R
Sbjct: 1192 VGDGVPTTVTYCQTEEDVPGSPADIKVVVSSPQALFISWLPPLEPNGIITKYNLYTR 1248


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 191 IPSAMNQLKTLLVSAPTEISETILEVGLSKILQCFNI 301
           + S +  L+ L V APT IS     V  SKI Q F I
Sbjct: 323 LTSILRYLQELHVDAPTWISSVTESVLKSKIGQVFLI 359


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 206 NQLKTLLVSAPTEISETILEVGLSKILQCF 295
           N+   L+V   + IS+  + + +SKI QCF
Sbjct: 95  NETDQLIVEC-SPISDANVHIKISKIFQCF 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,066
Number of Sequences: 438
Number of extensions: 3887
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)