Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o06
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069733-1|AAL39878.1|  541|Drosophila melanogaster LP05116p pro...   233   2e-61
AE014296-2793|AAF49418.2|  541|Drosophila melanogaster CG9701-PA...   233   2e-61
BT016101-1|AAV36986.1|  627|Drosophila melanogaster LD22777p pro...    29   4.9  
AF070690-1|AAC70934.1|  627|Drosophila melanogaster cytoplasmic ...    29   4.9  
AE014298-2987|AAN09557.1|  627|Drosophila melanogaster CG18000-P...    29   4.9  
AY113464-1|AAM29469.1|  482|Drosophila melanogaster RE39008p pro...    29   6.5  
AY069763-1|AAL39908.1|  387|Drosophila melanogaster RE01365p pro...    29   6.5  
AF202050-1|AAF20908.1|  244|Drosophila melanogaster nmdyn-D7 pro...    29   6.5  
AE014298-2785|AAF48898.1|  482|Drosophila melanogaster CG7326-PA...    29   6.5  
AE014297-999|AAF54425.1|  387|Drosophila melanogaster CG8362-PA ...    29   6.5  

>AY069733-1|AAL39878.1|  541|Drosophila melanogaster LP05116p
           protein.
          Length = 541

 Score =  233 bits (569), Expect = 2e-61
 Identities = 95/164 (57%), Positives = 128/164 (78%)
 Frame = +2

Query: 239 KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 418
           +FP +F++GV +++ QIEG WN D K ESIWD L H +PE + D SN DV++DSYH +KR
Sbjct: 25  RFPNDFLWGVGSSSYQIEGGWNADDKGESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKR 84

Query: 419 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 598
           D +MV EL V TYRFS+SWPRI+P G  N ++  GI YY+NLI+E+L+YNITPM+TIYHW
Sbjct: 85  DVQMVKELHVGTYRFSLSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHW 144

Query: 599 DLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE 730
           +LPQKLQ++GGW+N  I+  + DYA+++ + +GDRVK W T NE
Sbjct: 145 ELPQKLQELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNE 188


>AE014296-2793|AAF49418.2|  541|Drosophila melanogaster CG9701-PA
           protein.
          Length = 541

 Score =  233 bits (569), Expect = 2e-61
 Identities = 95/164 (57%), Positives = 128/164 (78%)
 Frame = +2

Query: 239 KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 418
           +FP +F++GV +++ QIEG WN D K ESIWD L H +PE + D SN DV++DSYH +KR
Sbjct: 25  RFPNDFLWGVGSSSYQIEGGWNADDKGESIWDFLTHTHPEKIVDRSNGDVSADSYHQWKR 84

Query: 419 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 598
           D +MV EL V TYRFS+SWPRI+P G  N ++  GI YY+NLI+E+L+YNITPM+TIYHW
Sbjct: 85  DVQMVKELHVGTYRFSLSWPRIMPGGYMNHVSTAGIKYYSNLIDELLRYNITPMVTIYHW 144

Query: 599 DLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE 730
           +LPQKLQ++GGW+N  I+  + DYA+++ + +GDRVK W T NE
Sbjct: 145 ELPQKLQELGGWTNPEIIPLFKDYARLVLEMYGDRVKIWTTVNE 188


>BT016101-1|AAV36986.1|  627|Drosophila melanogaster LD22777p
           protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 566 NITPMITIYHWDLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGD 700
           NI P  T+ +    Q     GG  +AH  DYY D  +   +N G+
Sbjct: 119 NIPPKETLVYTKQTQTTSTGGGNGDAHATDYYGDDEESSLQNLGN 163


>AF070690-1|AAC70934.1|  627|Drosophila melanogaster cytoplasmic
           dynein intermediatechain isoform DIC1b protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 566 NITPMITIYHWDLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGD 700
           NI P  T+ +    Q     GG  +AH  DYY D  +   +N G+
Sbjct: 119 NIPPKETLVYTKQTQTTSTGGGNGDAHATDYYGDDEESSLQNLGN 163


>AE014298-2987|AAN09557.1|  627|Drosophila melanogaster CG18000-PB,
           isoform B protein.
          Length = 627

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 566 NITPMITIYHWDLPQKLQDIGGWSNAHIVDYYTDYAKILFKNFGD 700
           NI P  T+ +    Q     GG  +AH  DYY D  +   +N G+
Sbjct: 119 NIPPKETLVYTKQTQTTSTGGGNGDAHATDYYGDDEESSLQNLGN 163


>AY113464-1|AAM29469.1|  482|Drosophila melanogaster RE39008p
           protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 PNRGRLECRR*IRKYLGSFGAQKPRVRQRW 372
           PN  RL C R  + Y G FGA  P + ++W
Sbjct: 316 PNSNRLRCFRACKLYYGVFGANPP-LLEKW 344


>AY069763-1|AAL39908.1|  387|Drosophila melanogaster RE01365p
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 356 RGFCAPNDPKYFRIYRLHSKRPLFG 282
           R FC P DP+  ++ R H+ R  FG
Sbjct: 334 RNFCGPMDPEIAKLLRPHTLRAKFG 358


>AF202050-1|AAF20908.1|  244|Drosophila melanogaster nmdyn-D7
           protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 356 RGFCAPNDPKYFRIYRLHSKRPLFG 282
           R FC P DP+  ++ R H+ R  FG
Sbjct: 191 RNFCGPMDPEIAKLLRPHTLRAKFG 215


>AE014298-2785|AAF48898.1|  482|Drosophila melanogaster CG7326-PA
           protein.
          Length = 482

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 283 PNRGRLECRR*IRKYLGSFGAQKPRVRQRW 372
           PN  RL C R  + Y G FGA  P + ++W
Sbjct: 316 PNSNRLRCFRACKLYYGVFGANPP-LLEKW 344


>AE014297-999|AAF54425.1|  387|Drosophila melanogaster CG8362-PA
           protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 356 RGFCAPNDPKYFRIYRLHSKRPLFG 282
           R FC P DP+  ++ R H+ R  FG
Sbjct: 334 RNFCGPMDPEIAKLLRPHTLRAKFG 358


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,538,762
Number of Sequences: 53049
Number of extensions: 672982
Number of successful extensions: 1515
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1515
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)