Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o06
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical ...   148   5e-36
U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical pr...   146   1e-35
Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.    29   3.4  
U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated p...    29   3.4  
U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine rece...    28   7.9  

>AF099915-3|AAC68766.1|  475|Caenorhabditis elegans Hypothetical
           protein E02H9.5 protein.
          Length = 475

 Score =  148 bits (358), Expect = 5e-36
 Identities = 69/165 (41%), Positives = 103/165 (62%), Gaps = 1/165 (0%)
 Frame = +2

Query: 239 KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 418
           KFP+NF    +TAA QIEGA +++G+  S WD  +   P  + D S+ D++ D    YK 
Sbjct: 6   KFPKNFKLATATAAYQIEGAKDLNGRGFSTWD-AIRLEPGRILDNSDPDLSCDGLLKYKE 64

Query: 419 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 598
           D  ++ E+GV  YRFS+SW RILP G  + INE GI +Y +L   + + NI P++T++H+
Sbjct: 65  DVALLAEIGVTNYRFSISWSRILPDGTLSTINEEGIKFYRDLCLLLKENNIEPVVTLFHF 124

Query: 599 DLPQKLQDIG-GWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE 730
           D+P  + D G  W N    +++  +A + F+ FGD VK WIT+NE
Sbjct: 125 DMPLAIYDNGTAWLNRENCEHFEKFADLCFQKFGDLVKTWITYNE 169


>U41557-9|AAA83309.1|  479|Caenorhabditis elegans Hypothetical
           protein C50F7.10 protein.
          Length = 479

 Score =  146 bits (354), Expect = 1e-35
 Identities = 68/165 (41%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
 Frame = +2

Query: 239 KFPENFIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEFVKDGSNADVASDSYHLYKR 418
           KFP+NF    +TAA QIEGA N+DG+  S WD +  +N   + D S+ D++ +    YK 
Sbjct: 6   KFPKNFQLATATAAYQIEGAKNLDGRGFSTWDSIRSENGR-IHDNSDPDLSCEGRLKYKE 64

Query: 419 DAEMVHELGVDTYRFSVSWPRILPTGLTNEINELGIAYYNNLINEILKYNITPMITIYHW 598
           D  ++ ++GV +YRFS+SW RILP G    INE GI +Y ++   +    I P++T++H+
Sbjct: 65  DVALLSKIGVTSYRFSISWSRILPDGTLKTINEDGIQFYRDICLLLRDNGIEPIVTLFHF 124

Query: 599 DLPQKLQDIG-GWSNAHIVDYYTDYAKILFKNFGDRVKYWITFNE 730
           D+P  + D G  W N    +++  +A + F+ FGD VK WITFNE
Sbjct: 125 DMPLSIYDNGTSWLNKENCEHFEKFADLCFQKFGDLVKTWITFNE 169


>Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical
           protein C06A12.5 protein.
          Length = 430

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = +2

Query: 200 EIVNLAGG---KNTNYKFPEN---FIFGVSTAAAQIEGAWNVDGKSESIWDHLVHKNPEF 361
           E+VNL GG   K +  K+ EN    +F  S A   I  A  VD    +  D +V   PE+
Sbjct: 75  EVVNLWGGYADKESGRKWSENTKSVMFSASKAVCSIVIAVMVDRGLLNYADRVVDYWPEY 134

Query: 362 VKDGSNADVASD 397
            + G NA    D
Sbjct: 135 GRYGKNATTIED 146


>Z81592-5|CAB04727.1|  434|Caenorhabditis elegans Hypothetical
           protein T16G1.5 protein.
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 335 HLVHKNPEFVKDGSNADVASDSYHLYKRDAEMVHELGVDTYRFSVSW 475
           HLV +  E   D       ++ + +++R+A+ VH   V+ YR +  W
Sbjct: 88  HLVSQMKEKNPDAFTEQQEAELWAMFEREAQNVHNREVNLYRITEKW 134


>U76402-1|AAB39734.1|  777|Caenorhabditis elegans degenerin protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 402 IIYISAML--KWFTSSELIHTDFLYRGPE 482
           I+Y+   +  K +TSS L+H DFL R P+
Sbjct: 728 IVYVQKKMQGKEYTSSSLMHIDFLQRSPK 756


>U40798-3|AAA81473.2|  777|Caenorhabditis elegans Uncoordinated
           protein 8 protein.
          Length = 777

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 402 IIYISAML--KWFTSSELIHTDFLYRGPE 482
           I+Y+   +  K +TSS L+H DFL R P+
Sbjct: 728 IVYVQKKMQGKEYTSSSLMHIDFLQRSPK 756


>U51997-2|AAG24069.1|  332|Caenorhabditis elegans Serpentine
           receptor, class h protein19 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 39  CIFNTKQIKVNYVLCDLTFIDLTLVLTSSV 128
           CIFN K  K +Y +    ++  TL++T+S+
Sbjct: 119 CIFNYKTHKFSYFVKSYVYLIRTLIITTSI 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,853,896
Number of Sequences: 27780
Number of extensions: 369197
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)