Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o03
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    33   0.047
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    27   2.3  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   4.0  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   4.0  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz...    26   5.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   7.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   9.4  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 16/57 (28%), Positives = 33/57 (57%)
 Frame = -1

Query: 590 LKEVSMKQLISFQIEYHDRWSDNLISCTPNISKTSIHNPKSVTRVNVNSKH*NNSFI 420
           L + S+   ++F +E+H+ +  NL + T NI  T IHN  +   + ++ K  +++F+
Sbjct: 522 LIDSSLISSLAFLLEHHEVYGSNLFASTTNIMSTFIHNEPTCYGI-IHEKKLSHAFL 577


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 590 LKEVSMKQLISFQIEYHDRWSDNLISCTPNISKTSIHNPKSVTRVNVNSKH 438
           ++ +S K L S           + I  TP I+KTS++  K     ++N KH
Sbjct: 797 IRLLSQKSLASVSSVSSISTYSSSIELTPQITKTSLNREKPALHGSINLKH 847


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -2

Query: 265 FHRPKPKGKLFAGTKSPLLMAFSRSAGVFHS*ST--SFQANRS 143
           F+R +   + F  T+SP   + SRS+   H  S+  SF +NRS
Sbjct: 43  FYRGRSSTRQFNNTRSPSGRSASRSSNFSHRSSSRDSFSSNRS 85


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/38 (26%), Positives = 18/38 (47%)
 Frame = -3

Query: 306 HHSSTWAPLQTICFSIALSPKANYSLVQSHHF*WHSHV 193
           H++ +W P +T+     L  K +  L+    F W  H+
Sbjct: 193 HYALSWLPAKTLAREAILKAKDSPILIVDQFFPWKGHL 230


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/45 (31%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -1

Query: 560 SFQIEYHDRWSDNLISCTPNISKTSIHN-PKSVTRVNVNSKH*NN 429
           S Q+   +  ++NL+S +PN+  TS+++   ++TR N+N    N+
Sbjct: 722 SLQLRVLELMTENLLSLSPNL--TSVNSLETAMTRYNINEDQRNS 764


>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 526

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
 Frame = +3

Query: 312 SSLNYVDLNGTSDQLLKPYPSLKD-NFIPDSAK--DLPSNKTIISVFRI 449
           + LN +DLN +SDQ L   PSL+  +  PDS K  + P  + +I++  I
Sbjct: 65  NQLNELDLNDSSDQ-LDSRPSLRRVSSAPDSHKGVEAPPPRPLINMSNI 112


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 354  LLKPYP---SLKDNFIPDSAKDLPSNKTIISVFRIYIDPCDRLWVMDTGLADI 503
            LLK Y    SL++  IP+SAK  P N  ++    IY+     L      + DI
Sbjct: 1487 LLKAYAMGTSLEELTIPESAKCSPLNYRVVWQLAIYLSKARSLCDFSDRVVDI 1539


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 297 KNGVASSLNYVDLNGTSDQLLKPYPSLKDNFIPDSAKDLPSNKTIIS 437
           +N V+     VD++    +++     L    IP +  DLPS+  I S
Sbjct: 652 RNKVSLKGASVDISSKDKEIISQKKQLSPKLIPSTPYDLPSSSQISS 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,376,651
Number of Sequences: 5004
Number of extensions: 72471
Number of successful extensions: 192
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)