Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o03
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619     31   1.4  
08_02_0440 + 17192122-17192691,17193947-17194912                       30   1.8  
04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329           28   7.4  
03_05_0774 - 27615899-27617134                                         28   7.4  
06_01_0323 + 2339916-2340065,2340535-2340732,2341158-2341307,234...    28   9.7  
03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-76...    28   9.7  

>06_03_0935 - 26094827-26094895,26095151-26095385,26095543-26095619
          Length = 126

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 239 FAFGLRAMEKQIVCNGAQVEEW 304
           + FG+ AM K+ VC+GA  E W
Sbjct: 27  WVFGMAAMRKEAVCSGASRERW 48


>08_02_0440 + 17192122-17192691,17193947-17194912
          Length = 511

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 630 VVDVDQNTCDDAFAYIPDLGGYGVVVYSLKQNDSWRVAHHFF 755
           V+ V  + C+      PDL  Y ++V+ L  N  WR A  FF
Sbjct: 413 VMQVWNDMCESTVG--PDLNSYTLLVHGLCDNKKWREACQFF 452


>04_03_0033 + 9936723-9937019,9937621-9937754,9938966-9939329
          Length = 264

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 93  PVVSSFMKECTMKNTGRVSLRPVRRDH 13
           P++S + KE T ++      RP+RR+H
Sbjct: 140 PMLSRYFKEKTQQSCEETHFRPIRREH 166


>03_05_0774 - 27615899-27617134
          Length = 411

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 19/50 (38%), Positives = 25/50 (50%)
 Frame = -2

Query: 259 RPKPKGKLFAGTKSPLLMAFSRSAGVFHS*STSFQANRSCGVAASHDATT 110
           +PK KGK+ AGTK P   A + +A       T  +  +S G  AS D  T
Sbjct: 224 KPKEKGKVAAGTKQPTAPAETATAS--SPGGTPEEKRKSKGKKASGDQGT 271


>06_01_0323 +
           2339916-2340065,2340535-2340732,2341158-2341307,
           2341596-2341649
          Length = 183

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 285 VPKWKNGVAS---SLNYVDLNGTSDQLLKPYPS 374
           VP WK  V     S+NY+ +  T D+  +PYPS
Sbjct: 68  VPNWKVDVQPREFSMNYIMVGYTLDKDYRPYPS 100


>03_01_0096 + 763850-764027,764873-765189,765262-765433,765513-765586,
            765658-765835,765917-766026,766122-766221,766305-766391,
            766505-766681,766847-767120,767201-767362,767450-767665,
            767744-767781,768044-768102,768214-768339,768415-768540,
            768642-768695,768789-768851,768924-768986,769079-769141,
            769232-769732
          Length = 1045

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 136  VAASHDATTKAMANASSFIVYERVYNEEYRQGQSTTGSAGPQAQ 5
            +  S D+  K + N SS +    V NE+ R+G +   S G + +
Sbjct: 933  ILRSSDSMNKKVTNNSSIVGAPEVVNEKKRKGDARNSSIGGELE 976


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,455,823
Number of Sequences: 37544
Number of extensions: 443655
Number of successful extensions: 1132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)