Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o01
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1038 + 27072405-27072407,27073306-27073501,27073674-270737...    30   1.8  
11_01_0742 + 6262311-6262509,6263505-6263622,6263981-6264042,626...    29   3.1  
03_05_0728 - 27174157-27174408,27175316-27175364,27175454-271755...    29   3.1  
01_06_0684 + 31196825-31197252,31199189-31199291,31199402-311995...    28   7.2  
06_01_0473 + 3359152-3359198,3359568-3359768,3360502-3360646,336...    28   9.5  

>06_03_1038 +
           27072405-27072407,27073306-27073501,27073674-27073750,
           27073945-27073999,27074310-27074370,27074482-27074554,
           27074948-27075538
          Length = 351

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 575 LHMTQDVQMSFHQQMETSVHLQRKV 649
           L M  +VQ  FH+Q+E   HLQ +V
Sbjct: 140 LRMKMEVQRRFHEQLEVQKHLQMRV 164


>11_01_0742 +
           6262311-6262509,6263505-6263622,6263981-6264042,
           6264139-6264191
          Length = 143

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/79 (20%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 502 FLIDHPTNIAGVLTYENASDIPSFFTHDTRCPNEFSSADGNQ--CSSSKEGGVVWNE-KG 672
           + +    N+     Y++   + +  TH+  CP ++SS +  +  C+ S E   ++ + +G
Sbjct: 36  YKVGRKINLRAHRNYDSLRRVLTKMTHNFFCPADYSSTNKGEEDCAKSDEFIFLYEDFEG 95

Query: 673 TGLLKREIPFPIFFIPESR 729
             +L  ++P+ +F     R
Sbjct: 96  DRMLVGDVPWELFLASAKR 114


>03_05_0728 -
           27174157-27174408,27175316-27175364,27175454-27175536,
           27175673-27175753,27175838-27175894,27176103-27176202,
           27176280-27176350,27176427-27176567,27176657-27176863,
           27177442-27177612,27177735-27177815,27177887-27177940,
           27178040-27178154,27178302-27178441,27178976-27179197,
           27179278-27179376,27179461-27179580,27179776-27179981,
           27180072-27180249,27180426-27180486,27180587-27180696,
           27180765-27180896,27181124-27181165,27181592-27181762,
           27181806-27181808,27181848-27181974,27182130-27182164,
           27182982-27183083,27183167-27183224,27183314-27183415,
           27183513-27183659,27183744-27183880,27183973-27184122,
           27184234-27184393,27184930-27185075,27185162-27185305,
           27185535-27185663,27186376-27186420,27187103-27187192,
           27187473-27187475
          Length = 1506

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 650 PPSFEDEHWFPSADENSFGHL--VSCVKNEGISEAFSYVST 534
           PP  ED   +  AD  SF +L   SC++ EGI++A  Y++T
Sbjct: 237 PP--EDTQRYKLADARSFHYLNQSSCIEVEGINDAEEYLAT 275


>01_06_0684 +
           31196825-31197252,31199189-31199291,31199402-31199512,
           31199614-31199697,31199915-31199986,31200073-31200129,
           31200427-31200546,31201301-31201324,31201953-31202063,
           31202165-31202202,31202287-31202443,31202700-31202801,
           31202878-31202934,31203113-31203259,31203429-31203499,
           31203582-31203669,31203810-31203866,31203996-31204193
          Length = 674

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 262 FKGYSCERLHELIYSSIEGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDHDD 423
           F G S E LH L+Y+ +  S A   ++  T+ + C     G + ++   Q   D
Sbjct: 410 FGGISIEELHRLVYAQVLCSHALTWQIAPTYLSSCLNQGLGLLEILLLKQPIQD 463


>06_01_0473 +
           3359152-3359198,3359568-3359768,3360502-3360646,
           3361141-3361407,3361608-3362150
          Length = 400

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 253 LLIFKGYSCERLHELIYSSIEGSAACFRRLNGTHQTGC 366
           LL F+GY  +    ++      +++ +  L+GTH T C
Sbjct: 163 LLSFRGYCADGPERVLVYDFMPNSSLYAHLHGTHSTEC 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,386,394
Number of Sequences: 37544
Number of extensions: 401870
Number of successful extensions: 987
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)