Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1o01
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical p...    42   4e-04
Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical p...    42   4e-04
U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone...    30   1.6  
AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical ...    29   2.8  

>Z75714-11|CAB00063.2|  723|Caenorhabditis elegans Hypothetical
           protein ZC434.6b protein.
          Length = 723

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
 Frame = +1

Query: 247 IILLIFKGYSCERLHELIYSSI---EGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDH 417
           +I+LI  G  C+   + ++ ++   EG+A C+R  N TH+ GC  + +   G++  +   
Sbjct: 6   VIVLIIAGIRCDGFSDQVFRTLFIGEGNA-CYRTFNKTHEFGCQANRENENGLIVRIDKQ 64

Query: 418 DDV-----LWLATNAS-AGPYMAVVSTSKFGLVEF-LIDHPTNIAGVLTYENASDI---- 564
           +D       W +     +G Y A++  +         +     ++G++ Y +   I    
Sbjct: 65  EDFKNLDSCWNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNSGESIHPGD 124

Query: 565 -PSFFTHDTRCPN---EFSSADGNQCSSSKEGGVVWNEKGTGLLKREIPFPIFFIPESR- 729
             +  +HD  CPN   ++   D N+    ++          GL+K +    + FI  S  
Sbjct: 125 ESTAASHDAECPNAASDYYLQDKNEEYCERKINSRGAITRDGLMKIDWRIQMVFIDNSTD 184

Query: 730 YEEIEKNQSLFRK 768
            E IEK  S+F K
Sbjct: 185 LEIIEKCYSMFNK 197


>Z75714-10|CAN99711.1|  721|Caenorhabditis elegans Hypothetical
           protein ZC434.6a protein.
          Length = 721

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
 Frame = +1

Query: 247 IILLIFKGYSCERLHELIYSSI---EGSAACFRRLNGTHQTGCSTSDKGAVGVVHFVQDH 417
           +I+LI  G  C+   + ++ ++   EG+A C+R  N TH+ GC  + +   G++  +   
Sbjct: 6   VIVLIIAGIRCDGFSDQVFRTLFIGEGNA-CYRTFNKTHEFGCQANRENENGLIVRIDKQ 64

Query: 418 DDV-----LWLATNAS-AGPYMAVVSTSKFGLVEF-LIDHPTNIAGVLTYENASDI---- 564
           +D       W +     +G Y A++  +         +     ++G++ Y +   I    
Sbjct: 65  EDFKNLDSCWNSFYPKYSGKYWALLPVNLIRRDTISQLKSSKCLSGIVLYNSGESIHPGD 124

Query: 565 -PSFFTHDTRCPN---EFSSADGNQCSSSKEGGVVWNEKGTGLLKREIPFPIFFIPESR- 729
             +  +HD  CPN   ++   D N+    ++          GL+K +    + FI  S  
Sbjct: 125 ESTAASHDAECPNAASDYYLQDKNEEYCERKINSRGAITRDGLMKIDWRIQMVFIDNSTD 184

Query: 730 YEEIEKNQSLFRK 768
            E IEK  S+F K
Sbjct: 185 LEIIEKCYSMFNK 197


>U55376-3|AAA98005.3|  525|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 45 protein.
          Length = 525

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 547 ENASDIPSFFTHDTRCPNEFSSADGNQ 627
           +N+S IPS FT   + P E+++  GNQ
Sbjct: 201 QNSSAIPSSFTQYNQVPQEYNNESGNQ 227


>AF077546-8|AAC26320.2|  649|Caenorhabditis elegans Hypothetical
           protein T08E11.1 protein.
          Length = 649

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 48  ENLIFLKLAYQVHLKKE*KPVTFSFSERITIISAT*YEIVLIKGK 182
           EN + L L ++ H K     VT++F E  T++  T Y  +L+K K
Sbjct: 27  ENHVDLVLDFENHFKLS--KVTYTFKEEDTLVEVTEYNKLLVKEK 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,679,122
Number of Sequences: 27780
Number of extensions: 389887
Number of successful extensions: 1011
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)