Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1n14
(734 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 123 3e-29
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 120 3e-28
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 33 0.056
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 31 0.23
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.39
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 30 0.39
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.2
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 27 2.1
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 27 2.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 27 2.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 27 2.8
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 2.8
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 2.8
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 3.7
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 27 3.7
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 27 3.7
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 27 3.7
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 26 4.8
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 22 8.1
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.5
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 8.5
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 25 8.5
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 123 bits (296), Expect = 3e-29
Identities = 77/172 (44%), Positives = 106/172 (61%), Gaps = 9/172 (5%)
Frame = +3
Query: 243 MATDQAKNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD--- 410
M + +R FK+ G DE+RR+R E +E+RK KREE+L KRRN+ D
Sbjct: 1 MESRYLSDRRSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDV 60
Query: 411 EEEIDKNLATTDL---DELVMNAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAG 575
EEE D++ + DE A+ +++ E QL AV + RK LS + +PPID++IA G
Sbjct: 61 EEEADQSQVQMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACG 120
Query: 576 ILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
++ VQ L +++ LQFE AWALTNIASGT+ QT VV +GAVP F+QLL
Sbjct: 121 VVDRFVQFLE-SEHHLLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLL 171
Score = 36.3 bits (80), Expect = 0.005
Identities = 23/68 (33%), Positives = 35/68 (51%)
Frame = +3
Query: 528 LSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGA 707
LS N I ++ G P LV+ LS + + +Q ++ NI +GT AQT ++ GA
Sbjct: 275 LSDGPNEKIGAILDVGCAPRLVELLS-SPSVNIQTPALRSVGNIVTGTDAQTQIIIDCGA 333
Query: 708 VPVFLQLL 731
+ F LL
Sbjct: 334 LNAFPSLL 341
Score = 31.1 bits (67), Expect = 0.17
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +3
Query: 561 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
++ +G +P +Q LS + + + WAL NIA +SA + V+ G + L +L
Sbjct: 158 VVDSGAVPRFIQLLSSPEKDVRE-QVVWALGNIAGDSSACRDYVLGNGVLQPLLNIL 213
Score = 29.5 bits (63), Expect = 0.52
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 555 DELIAAGILPILVQCL-SRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
D ++ G+L L+ L S A + ++ W L+N+ G + N + AVP+ +LL
Sbjct: 198 DYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPNWSTISVAVPILAKLL 257
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 120 bits (288), Expect = 3e-28
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 7/164 (4%)
Frame = +3
Query: 261 KNRMHVFKNAGK-DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-KNL 434
++R +K G DE+RRRR +E+RK KREE L KRRN+ EE I +
Sbjct: 10 EHRRQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETIPLEQD 69
Query: 435 ATTDLD-EL----VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 599
DL+ EL ++ A +++ EAQ+ A + RK LS + NPPI ++I AG++P V+
Sbjct: 70 KENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEF 129
Query: 600 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
LS +N L+FE +WALTN+ASG+S QT+ VV A AVPVF+ LL
Sbjct: 130 LSHENN-LLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLL 172
Score = 32.3 bits (70), Expect = 0.074
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +3
Query: 540 KNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVF 719
KNP D + ++P+L + + D L + WA++ ++ G + + ++ AG
Sbjct: 237 KNPQPDWNSISQVIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPRRL 295
Query: 720 LQLLM 734
++LLM
Sbjct: 296 VELLM 300
Score = 29.1 bits (62), Expect = 0.69
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +3
Query: 561 LIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
++ A +P+ V LS ++ + + WAL NIA + + V+ G + L ++
Sbjct: 159 VVEANAVPVFVSLLSSSEQDVRE-QAVWALGNIAGDSPMCRDHVLQCGVLEPLLNII 214
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/59 (20%), Positives = 28/59 (47%)
Frame = +3
Query: 555 DELIAAGILPILVQCLSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFLQLL 731
D ++ G+L L+ + ++ + W L+N+ G + Q + + +PV +L+
Sbjct: 199 DHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNPQPDWNSISQVIPVLSKLI 257
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 32.7 bits (71), Expect = 0.056
Identities = 25/101 (24%), Positives = 43/101 (42%)
Frame = +3
Query: 420 IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQC 599
+DK L ++ + +N ++ V Q +LS D + + + A GILP+L +
Sbjct: 512 LDKRTHLASLLSSLLGSLRDKNIGSKDTTVSQIASILSEDLSLKREIIQAHGILPLL-ET 570
Query: 600 LSRADNPALQFETAWALTNIASGTSAQTNKVVHAGAVPVFL 722
L P +Q + +A KV AG +P+ L
Sbjct: 571 LREIKTPDVQLLLLKLINTVAFDDHTTLQKVCFAGGLPLML 611
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/58 (34%), Positives = 36/58 (62%)
Frame = -2
Query: 580 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 407
SIP + SS ++ SS + ++++ S FS++++ ++SS+ S + LSISSSS
Sbjct: 544 SIPTSSSSDFSSSITTISSGI---SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSS 598
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.39
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 306 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL-VMNAANAE 482
E++ R ++ E K ++ + Q+RR + S E DKN++ DLDE +++ A
Sbjct: 51 ELKIRVAQLERERAKLEQSLSFQQRRAEMLEKSLRELRKDKNISVKDLDEFHLLDKPAAN 110
Query: 483 NPEAQLAA 506
N +A A
Sbjct: 111 NTKADAEA 118
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 29.9 bits (64), Expect = 0.39
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Frame = +3
Query: 225 TASTDKMATDQ--AKNRMHVFKN-AGKDVDE---MRRR---RNEVTVELRKNKREETLQK 377
TAS ++ D +NR +N +G V+E + R+ R + ++ ++N+ T+QK
Sbjct: 261 TASLEEYLNDPDFEENRKQYLQNKSGSPVEETAILNRKPTLRKKKSIPKKQNESSSTIQK 320
Query: 378 RRNVPISYSTDEEEIDKNLATT 443
V S+ EEE K+L T
Sbjct: 321 ENTVQQEASSSEEEAVKSLPET 342
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = -2
Query: 580 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 407
S P + SS+I S SSF ++++ +S S+ ++ TSSS ++ + S SSSS
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTLSSSSMSSS-SSFSSSPTSSSSTISSSSSSPSSSS 354
Score = 26.2 bits (55), Expect = 4.8
Identities = 25/82 (30%), Positives = 39/82 (47%)
Frame = -2
Query: 652 VKAQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSAL 473
V + + S ++ S L SIP+ SSS S SS + A+ +S S++
Sbjct: 215 VVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSS--SSSSTASSSSSSSSI 272
Query: 472 AAFITSSSRSVVARFLSISSSS 407
+ +SSS S + +ISSSS
Sbjct: 273 ISSSSSSSSSPTSTSSTISSSS 294
Score = 25.8 bits (54), Expect = 6.4
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = -2
Query: 646 AQAVSNCNAGLSALERH*TRMGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAA 467
+ VS+ ++ S+ + S PA+ SS SH+SS ++A +S F +
Sbjct: 369 SSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHNST 428
Query: 466 FITSSSRSVVARFLSISSSSV 404
SSS S S+SS +
Sbjct: 429 SSRSSSHSSSHSLSSLSSKPI 449
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = -2
Query: 580 SIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSISSSS 407
S P + SS+I S SS T ++ S S+ ++ ++SSS + + S SSSS
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSS-SSFSSTVSSSSSTSSSTLTSSSSSS 390
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 290 CILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 159
C+ E +FRL +C C + NY++ Q N L SK
Sbjct: 93 CLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLFNHSLNESK 136
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 258 AKNRMHVFKNAGKDVDEMRR--RRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 419
A M V +G DVD ++E T+E K K E Q+R+ + T ++E
Sbjct: 447 ANGEMEVTFTSGFDVDNNANSSEKDETTIEKYKRKAAERKQRRKELRQLKKTKDDE 502
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/41 (29%), Positives = 27/41 (65%)
Frame = +3
Query: 261 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 383
++R+ ++ K++DE RR++ E+ +E ++ E+ L+K R
Sbjct: 294 ESRLQKMQDNAKELDESRRKKIEL-LEKKERDEEQFLEKER 333
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 717 IQVLHRHGLLCLFVQTFRKLCLLKPKRSRIVTLDCQPSKGTE 592
+Q L+RHGL+ + + + + LK K + ++ + Q G E
Sbjct: 1667 VQYLYRHGLIKVLIASRDVIYSLKAKSNAVIVMGTQYYDGKE 1708
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Frame = +3
Query: 180 VDSLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRK-NK 356
V SLF + ++ ++ TD + + ++A +DE+R+ +E ++++ +K
Sbjct: 430 VKSLFKTYVDVVHIKKQDKRRLGTDPSTLESDIAEDAALQIDEVRKISDEEVEKIQQVSK 489
Query: 357 REE--TLQKRRNVPISYSTDE 413
R++ + R P Y D+
Sbjct: 490 RDDIYDILSRSLAPSIYEMDD 510
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +1
Query: 184 ILCFFV*LPRT-VSRQRAQ-IKWRLIKRKTACM 276
IL F+ +PRT + + R + + WR+I R AC+
Sbjct: 400 ILASFLPIPRTKIHQMRVKHVHWRIINRVVACL 432
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 27.1 bits (57), Expect = 2.8
Identities = 23/129 (17%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Frame = +3
Query: 222 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 401
+TAS++K + + ++ + F N K + + ++N+ + R + +S
Sbjct: 102 QTASSNKTFSKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATSRPLALSS 161
Query: 402 STDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS--CDKNPPIDELIAAG 575
T ++ +K A ++ + + N++ ++ ++ K +S + ++ IA G
Sbjct: 162 DTSYQKSEK--AKSEKSPFLSTSKNSDANYSKTTNQKEAEKAVSQLFEVGVRFNDFIAEG 219
Query: 576 ILPILVQCL 602
I P +V L
Sbjct: 220 IEPSVVHTL 228
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/89 (22%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Frame = +3
Query: 231 STDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQ--KRRNVPISYS 404
ST+ D + N+ K VD ++ + T ++ + Q K+++ ++ S
Sbjct: 9 STEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNES 68
Query: 405 TDEEEIDKNLATTDLDELVMNAANAENPE 491
DE+ + ++ DEL + AEN E
Sbjct: 69 EDEDFAGFGESASENDELESAESEAENDE 97
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/50 (22%), Positives = 27/50 (54%)
Frame = +3
Query: 306 EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 455
E++R++++ E K KR++ L+ + + DE++ ++ D D+
Sbjct: 5 ELKRKKHQSGNEEVKEKRQKPLKNDKKIAEELPQDEDDYEQEEENEDADQ 54
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +3
Query: 255 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPIS 398
Q K F G +++ ++ + ELRK K+E +++ + +S
Sbjct: 996 QEKEEGDTFDAFGNKIEKAKKAKKLTGAELRKKKKERMARRKAGLEVS 1043
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 482 FCVGSVHHQLIKVGGSEVLVDLLLI 408
+C G H ++ +GGS V +DL+ I
Sbjct: 263 YCTGDGHKMVMSIGGSTVDLDLVQI 287
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Frame = +3
Query: 315 RRRNEVTVELRKNKREETLQKRRNVPISYSTDEE-------EIDKNLATTDLDELVMNAA 473
R+R++ ++KN R+++ Q++RN+ ++EE EID + + +
Sbjct: 113 RKRSDKLKTMKKN-RKQSFQRKRNILEDGKSEEEKFPMKCDEIDPYSRQAIVIRYISDEV 171
Query: 474 NAENPEA-QLAAVQQCRKLLSCDK--NPPIDELIAAGIL 581
EN Q+ + Q KL+ K P +D + GI+
Sbjct: 172 AKENIGGNQVYLIHQLLKLVRAPKFEAPEVDNYVVMGIV 210
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 21.8 bits (44), Expect(2) = 8.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 360 EETLQKRRNVPISYSTDEEEIDKNLATTDLD 452
E+T+ + + I YST + ++ A DL+
Sbjct: 94 EKTINNNQELRIKYSTSPQRFIESEADLDLE 124
Score = 21.8 bits (44), Expect(2) = 8.1
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Frame = +3
Query: 474 NAENPEAQLAAVQQCRKLLSCDKNPP-----IDELIAAGILPILVQCLSRAD 614
N EN + + ++ +L D +P LI +G+LP+L + R D
Sbjct: 155 NHENADITITVLELLIELTDEDVDPDALNSLFTSLIDSGLLPLLSNTIKRFD 206
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 273 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNV 389
HV + K +E R+R+ E+ E+R+++ +E +K++ +
Sbjct: 352 HVDSISIKAQEEERKRQAEIEKEIRQSRLQEEERKKKKL 390
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 333 TVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 434
T+E KN +T + ++ +SY D + +DK +
Sbjct: 137 TLETEKNLNSKTSESLKSPTLSYPFDLDSLDKRI 170
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +3
Query: 399 YSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 563
+S+DEEE+D T+ +E N A E + +Q + + +K P DE+
Sbjct: 146 FSSDEEEMDDISVTSSEEEEEENGARIEELNSDEEDAEQAEEEI-LEKPVPKDEV 199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,831
Number of Sequences: 5004
Number of extensions: 63890
Number of successful extensions: 277
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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