Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1n09
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.05c |||signal recognition particle subunit |Schizosacch... 33 0.030
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.21
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 30 0.28
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 30 0.37
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.5
SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr 2|||Ma... 27 2.6
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 27 3.5
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 26 6.0
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 25 8.0
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 8.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 8.0
>SPCC1682.05c |||signal recognition particle subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 33.5 bits (73), Expect = 0.030
Identities = 25/101 (24%), Positives = 46/101 (45%)
Frame = +1
Query: 370 NNAENRLLYIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEES 549
++ + R I L A+RA+ + LR ++ H + RLK+A G+ L+
Sbjct: 105 SSVDKRYAEILLFNADRAFQQFVFLRSS------QRRHALRRLKRADQFGKELVSFTNAF 158
Query: 550 GRCEARTVLEAGAYASWLRGVLLLELQQWREAADSLQRARI 672
+ LEA A+A ++ G L E + W + + +R+
Sbjct: 159 DCNDHIFYLEAIAFAKYIEGTLNYEKRDWEGSLSAFSISRL 199
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.21
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = -3
Query: 704 AGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 525
+ K+ S SST+ + + S+++ +SSS+ P S +++ + S+ ++ SS S S
Sbjct: 361 SSKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKS-----SSSSKSS 415
Query: 524 ICPCAHAFFSRDT 486
P + AF+ T
Sbjct: 416 SAPVSSAFYHNST 428
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGL 409
+SRH+ L + F ++HGM PC GL
Sbjct: 46 ESRHESDLIKSILLPFHNRIHGMLPCKQGL 75
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 29.9 bits (64), Expect = 0.37
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -3
Query: 686 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 525
S SS+ + + S++S +SSS++ S + P +S+ +SH SS S S
Sbjct: 175 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSS 228
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = -3
Query: 686 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 525
S SST S++S +SSS++ S + + +SS+ +S SS S S
Sbjct: 145 SSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 198
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -3
Query: 704 AGKAVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAY-APASSTVRASHLPLSSQSCK 528
+ + S SS++L+ + +A S +SSS++P S ++ +PASS+ S + SSQ
Sbjct: 37 SSSVIPSSSSSMLSSSSATAIS----SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSS 92
Query: 527 S 525
S
Sbjct: 93 S 93
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = -3
Query: 695 AVQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTV----RASHLPLSSQSCK 528
++ S +S+ + + SAA+ +SSS P S + +SS +S PLSS S
Sbjct: 13 SLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFT 72
Query: 527 SICPCAHAFFS 495
S P + +F +
Sbjct: 73 S--PASSSFIT 81
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 109 SEIENGKVTAVENSDKKNE-KAPILLNLEIFRITRDSQQQHGLRHAD 246
+E+ + + ++ +K+N+ K +LL E R TR+ ++ LRHAD
Sbjct: 1025 NELSSHRNAEKQHLEKENDYKQQLLLVTEDLRKTREDYEKELLRHAD 1071
>SPBC16G5.02c |||ribokinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 318
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +1
Query: 394 YIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTV 573
Y E A A +++ T F + + AHGQ L E + +C A TV
Sbjct: 236 YYKSANGESALVSACKVKAVDTTAAGDTF--IGAFSNSIAHGQPLKDSLEFAAKCSAITV 293
Query: 574 LEAGAYAS 597
GA +S
Sbjct: 294 QRKGAASS 301
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/74 (14%), Positives = 35/74 (47%)
Frame = -2
Query: 336 TVMASVSLWYFEYFSQSSYAARTIATISLIISMSETMLLLTVSCYPKYF*VEEDGCLLIF 157
T+ + LW+F + + + ++ ++ ++ +VSC+ + + + ++F
Sbjct: 116 TLSSLPPLWFFSFLYYTDIGSTFFVLLAYDFALRKSAFSSSVSCFFSLWFRQTNIVWMVF 175
Query: 156 LIRIFYRCHLSIFN 115
+ ++ ++S FN
Sbjct: 176 IAVTYFASNMSFFN 189
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -3
Query: 593 AYAPASSTVRASHLPLSSQSCKSI--CPCAHAFFSRD 489
A AP +++R L++ SC+ I CP H FF D
Sbjct: 675 ASAPPDTSLRV--WDLNTGSCRDILKCPLGHIFFQHD 709
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Frame = +2
Query: 602 CGACCCWSCNNG-ARQRTHC 658
CG CWSC NG +++ C
Sbjct: 271 CGHIFCWSCINGWTSKKSEC 290
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -3
Query: 686 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLS 543
S SS I C A+ + N SS+ PR ++Y P + R + PLS
Sbjct: 19 STSSNISDNC---ASRDYDVNISSDNPRLLDSYRPKGNYGRDRNSPLS 63
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
transporter Bfr1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +2
Query: 434 PCNCVRKLTLNREKSFILCLD*RKHVHMGRCFCSFVRKAAGAKRVR 571
PCN R+ ++RE+ I H + FVR +G +R R
Sbjct: 271 PCNLTRQEYVSRERHLIATAFGLTHTFNTKVGNDFVRGVSGGERKR 316
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,464
Number of Sequences: 5004
Number of extensions: 53907
Number of successful extensions: 221
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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