Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1n09
(706 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0195 - 14098865-14099083,14100209-14100352,14101820-141018... 50 2e-06
03_04_0066 + 17003276-17004067 31 1.2
09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166 30 2.1
05_05_0152 + 22762994-22763326,22763857-22763989,22764281-227643... 30 2.1
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159... 29 2.7
01_01_0367 + 2872650-2873045,2873800-2873940,2874255-2874364,287... 29 2.7
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336... 29 3.6
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364... 29 3.6
02_05_0433 - 28939817-28940146 29 4.8
01_04_0139 - 16570515-16571141 29 4.8
02_01_0305 + 2041370-2043114,2043764-2044121 28 6.3
02_04_0287 + 21600047-21600478 28 8.3
01_06_0097 + 26413647-26415101 28 8.3
>08_02_0195 -
14098865-14099083,14100209-14100352,14101820-14101833,
14101919-14102006,14102303-14102426,14102959-14103068,
14103142-14103348,14103441-14103568,14103781-14103892,
14105678-14105695,14105917-14106109,14106274-14106359,
14106494-14106582,14106817-14106863,14107424-14107534,
14110252-14110318,14110419-14110509
Length = 615
Score = 49.6 bits (113), Expect = 2e-06
Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Frame = +1
Query: 163 EKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXXXXXXXXXXXXPQGDRRHYRRR 342
EK + ++ + + R++Q QHGLRH DY G R Y +R
Sbjct: 21 EKPLVRFSINVLELMREAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFLHG-RGKYTKR 79
Query: 343 DVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACAHGQ 522
++T + +T + RL P ++ + + R +KA
Sbjct: 80 NITESTVT----DVRLFPSP-------------------SKSIYYYRHICRFRKAVKWAT 116
Query: 523 MLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWREAA-DSLQRARIVLEQL 687
+ LC G ++RT LEA AYAS+++G LL E ++ EAA + + R V E+L
Sbjct: 117 LFSHLCSLKG--DSRTSLEAEAYASYMKGTLLFEQEKNIEAAMTNFKNTRAVYEEL 170
>03_04_0066 + 17003276-17004067
Length = 263
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 542 RKAAGAKRVRC*R--RARTLLGCGACCCW 622
R+ G + VRC R R ++ CGACC W
Sbjct: 172 RRLQGVRVVRCGRCDEERWVVRCGACCAW 200
>09_02_0257 + 6355876-6356444,6356690-6357136,6357231-6359166
Length = 983
Score = 29.9 bits (64), Expect = 2.1
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 1/113 (0%)
Frame = +1
Query: 334 RRRDVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEANTEPRKKFHLVSRLKKACA 513
R R T + + E L + ERA L ++ L + + ACA
Sbjct: 650 RERRAAETEVASRRREEALEARAMALEERACVVERDLADRKAAVAIREVTLAAH-EAACA 708
Query: 514 HGQMLLQLCEESGRCEARTVLEAGAYASWL-RGVLLLELQQWREAADSLQRAR 669
+ L+LCE++ R + EA A A L L E Q +A +L+ AR
Sbjct: 709 EEESALRLCEDTLTERERALEEAEAAAQKLAESASLREAAQEEQARRNLEGAR 761
>05_05_0152 +
22762994-22763326,22763857-22763989,22764281-22764362,
22764786-22764939,22765028-22765162
Length = 278
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -2
Query: 582 RL*HRTRFAPAAFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQ-LHGMSPCPLGLQ 406
R HR + P+ T+ ++H+ +C + H++ L SFL Q L+G+ PC
Sbjct: 170 RFCHRL-YRPSTVTTEYREHVKDLSCLSKDFHRIVLVDNNPYSFLLQPLNGI-PCLTFSA 227
Query: 405 QRYVQQSILGIV 370
+ V ++G++
Sbjct: 228 GQPVDDQLMGVI 239
>02_05_1041 -
33713561-33714564,33714844-33714904,33715640-33715951,
33716780-33716917
Length = 504
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -2
Query: 558 APAAFLTKLQKHLPMCTCFLQSRHKMKLFSRFSVSFLTQLHGMSP-CPLGLQQRYVQQSI 382
A +FLT +++ MC FLQ R + R S + + + P QQ V SI
Sbjct: 137 ARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSI 196
Query: 381 LGIVGRKVG 355
L G G
Sbjct: 197 LAASGHHSG 205
>01_01_0367 +
2872650-2873045,2873800-2873940,2874255-2874364,
2875279-2875390,2875959-2876030,2876605-2876696,
2877116-2877236,2877712-2877834,2877935-2878130,
2878221-2878408,2878553-2878624,2879336-2879434,
2880027-2880107,2880337-2880405,2880730-2880787,
2881181-2881347
Length = 698
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/58 (27%), Positives = 26/58 (44%)
Frame = -3
Query: 692 VQSCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSIC 519
+ + SST A C+ S ++ P +EA APA+ R PL + ++C
Sbjct: 35 LSTASSTSSASCSPSPLRTLAATDAATPPPEEEAAAPAAEAKRERLQPLQWPARDALC 92
>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
3363820-3364098,3364189-3364386,3364475-3365110,
3365209-3365463,3365579-3365685,3365770-3369566,
3369677-3370166,3370918-3371308,3371481-3371573,
3371687-3371810,3372544-3372791
Length = 2380
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Frame = +1
Query: 310 PQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 453
PQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410
Query: 454 ANTEPRK 474
A ++ R+
Sbjct: 1411 AQSQNRR 1417
>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
3645328-3645525,3645614-3646249,3646352-3646606,
3646718-3646824,3646909-3650705,3650816-3651305,
3652043-3652433,3652621-3652713,3652818-3652941,
3653871-3654118
Length = 2350
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Frame = +1
Query: 310 PQGDRRHYRRRDVTTTHLTA--NNAENRLL-----YI-----PLLQAERAWAHAMQLRQE 453
PQ D R+ ++ DV TH + ++ E++L+ YI + ++R WA RQE
Sbjct: 1351 PQSDLRYSKQTDVGVTHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQE 1410
Query: 454 ANTEPRK 474
A ++ R+
Sbjct: 1411 AQSQNRR 1417
>02_05_0433 - 28939817-28940146
Length = 109
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +1
Query: 628 QQWREAADSLQRARIVLEQ 684
QQWR++ +L+R R++LEQ
Sbjct: 54 QQWRQSMQALERERLMLEQ 72
>01_04_0139 - 16570515-16571141
Length = 208
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/38 (44%), Positives = 19/38 (50%)
Frame = +3
Query: 561 SAYGARGGRVRFLAAGRVAAGVATMARGSGLIATGQDR 674
SA GGR R+ G AAGV ARG G G+ R
Sbjct: 78 SAGDGDGGRRRWQRDGEAAAGVEAAARGDGDGVRGRRR 115
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 650 SAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKSICPCA 510
+AA+RH +SS++ A AP+S+ A+ SS S ++ A
Sbjct: 32 AAAARHAAAASSSSAARHAAAAPSSAATLATAAAPSSSSAATLAAAA 78
>02_04_0287 + 21600047-21600478
Length = 143
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 623 SSSNTPRSQEAYAPASSTVRASHLPLSSQSCK 528
++ T E Y P SS ASH P S++ C+
Sbjct: 51 AAETTMCGTERYPPRSSPTPASHAPASARRCR 82
>01_06_0097 + 26413647-26415101
Length = 484
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 706 PPARLYRVVRVRSWPVAMSP 647
PPARL V R WPVA +P
Sbjct: 75 PPARLKIAVFSRKWPVASAP 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,037,394
Number of Sequences: 37544
Number of extensions: 387743
Number of successful extensions: 1364
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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