Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1n09
(706 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein. 152 1e-36
AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens ... 152 1e-36
AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition part... 151 3e-36
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 31 3.0
AB126079-1|BAD20206.1| 202|Homo sapiens keratin associated prot... 31 3.0
DQ338460-1|ABC69298.1| 494|Homo sapiens putative RhoGAP protein... 31 5.3
BC114490-1|AAI14491.1| 494|Homo sapiens Rho GTPase activating p... 31 5.3
BC113888-1|AAI13889.1| 465|Homo sapiens ARHGAP19 protein protein. 31 5.3
AY336750-1|AAR02412.1| 517|Homo sapiens putative RhoGAP protein... 31 5.3
AL359385-3|CAI13731.2| 494|Homo sapiens Rho GTPase activating p... 31 5.3
AL359385-1|CAI13728.1| 485|Homo sapiens Rho GTPase activating p... 31 5.3
AK093316-1|BAC04130.1| 313|Homo sapiens protein ( Homo sapiens ... 31 5.3
AK074122-1|BAB84948.1| 196|Homo sapiens FLJ00194 protein protein. 31 5.3
AY779755-1|AAV31776.1| 159|Homo sapiens truncated nuclear facto... 30 7.0
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 30 9.3
>BC020238-1|AAH20238.1| 596|Homo sapiens SRP68 protein protein.
Length = 596
Score = 152 bits (369), Expect = 1e-36
Identities = 83/199 (41%), Positives = 120/199 (60%)
Frame = +1
Query: 100 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 279
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 34 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 90
Query: 280 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEAN 459
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 91 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 146
Query: 460 TEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWR 639
TEPRK+FHL+SRL+KA H + L +LC ES R +A+T LEA AY ++L G+L E Q+W+
Sbjct: 147 TEPRKRFHLLSRLRKAVKHAEELERLC-ESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWK 205
Query: 640 EAADSLQRARIVLEQLCTA 696
A ++ + + + E+L +A
Sbjct: 206 AAIEAFNKCKTIYEKLASA 224
>AK074698-1|BAC11145.1| 627|Homo sapiens protein ( Homo sapiens
cDNA FLJ90217 fis, clone MAMMA1002234, highly similar to
SIGNAL RECOGNITION PARTICLE 68 KD PROTEIN. ).
Length = 627
Score = 152 bits (369), Expect = 1e-36
Identities = 83/199 (41%), Positives = 120/199 (60%)
Frame = +1
Query: 100 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 279
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 34 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 90
Query: 280 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEAN 459
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 91 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 146
Query: 460 TEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWR 639
TEPRK+FHL+SRL+KA H + L +LC ES R +A+T LEA AY ++L G+L E Q+W+
Sbjct: 147 TEPRKRFHLLSRLRKAVKHAEELERLC-ESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWK 205
Query: 640 EAADSLQRARIVLEQLCTA 696
A ++ + + + E+L +A
Sbjct: 206 AAIEAFNKCKTIYEKLASA 224
>AF195951-1|AAF24308.1| 619|Homo sapiens signal recognition
particle 68 protein.
Length = 619
Score = 151 bits (365), Expect = 3e-36
Identities = 82/199 (41%), Positives = 120/199 (60%)
Frame = +1
Query: 100 GQESEIENGKVTAVENSDKKNEKAPILLNLEIFRITRDSQQQHGLRHADYQXXXXXXXXX 279
G E EN + +A K N++ L+LEI +I ++SQQQHGLRH D+Q
Sbjct: 26 GGEENKENERPSA---GSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRR 82
Query: 280 XXXXXXXXXXPQGDRRHYRRRDVTTTHLTANNAENRLLYIPLLQAERAWAHAMQLRQEAN 459
G+R + + VT LT +NR L + L+ AERAW++AMQL+QEAN
Sbjct: 83 QRRLRKTLNFKMGNRHKFTGKKVTEELLT----DNRYLLLVLMDAERAWSYAMQLKQEAN 138
Query: 460 TEPRKKFHLVSRLKKACAHGQMLLQLCEESGRCEARTVLEAGAYASWLRGVLLLELQQWR 639
TEPRK+FHL+SRL+KA H + L +LC +S R +A+T LEA AY ++L G+L E Q+W+
Sbjct: 139 TEPRKRFHLLSRLRKAVKHAEELERLC-KSNRVDAKTKLEAQAYTAYLSGMLRFEHQEWK 197
Query: 640 EAADSLQRARIVLEQLCTA 696
A ++ + + + E+L +A
Sbjct: 198 AAIEAFNKCKTIYEKLASA 216
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 31.5 bits (68), Expect = 3.0
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = -3
Query: 686 SCSSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 525
S SS+ + + S++S SSSN+ S + +P+SS+ +S P SS S S
Sbjct: 84 SSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPS 137
>AB126079-1|BAD20206.1| 202|Homo sapiens keratin associated protein
protein.
Length = 202
Score = 31.5 bits (68), Expect = 3.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +2
Query: 548 AAGAKRVRC*RRARTLLGCGACCCWSCNNGARQRTHCNGPGSYSNNSVQPC 700
+ G + C + GCG+CC SC N ++ C P ++ +PC
Sbjct: 136 SCGCSQCNCCKPCCCSSGCGSCCQSSCCNPCCCQSSCCVPVCCQSSCCKPC 186
>DQ338460-1|ABC69298.1| 494|Homo sapiens putative RhoGAP protein
protein.
Length = 494
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>BC114490-1|AAI14491.1| 494|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 494
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>BC113888-1|AAI13889.1| 465|Homo sapiens ARHGAP19 protein protein.
Length = 465
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 356 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 402
>AY336750-1|AAR02412.1| 517|Homo sapiens putative RhoGAP protein
protein.
Length = 517
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>AL359385-3|CAI13731.2| 494|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 494
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 385 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 431
>AL359385-1|CAI13728.1| 485|Homo sapiens Rho GTPase activating
protein 19 protein.
Length = 485
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 376 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 422
>AK093316-1|BAC04130.1| 313|Homo sapiens protein ( Homo sapiens
cDNA FLJ35997 fis, clone TESTI2015042, weakly similar to
RHO-GTPASE-ACTIVATING PROTEIN 1. ).
Length = 313
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 204 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 250
>AK074122-1|BAB84948.1| 196|Homo sapiens FLJ00194 protein protein.
Length = 196
Score = 30.7 bits (66), Expect = 5.3
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 498 QSRHKMKLFSRFSVSFLTQLHGMSPCPLGLQQRYVQQSILGIVGRKV 358
+S K +L +F+ LTQ G P +Q+R +S G++ RKV
Sbjct: 87 ESAKKKQLIRQFNKQSLTQTPGREPSTSQVQKRARSRSFSGLIKRKV 133
>AY779755-1|AAV31776.1| 159|Homo sapiens truncated nuclear factor
of kappa light polypeptide gene enhancer in B-cells in
protein.
Length = 159
Score = 30.3 bits (65), Expect = 7.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 617 CWSCNNGARQRTHCNGPGSYSNNSV 691
CWS GAR+RT G ++SN V
Sbjct: 52 CWSGGGGARRRTRLGGSAAHSNRWV 76
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 29.9 bits (64), Expect = 9.3
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = -3
Query: 680 SSTILARCNESAASRHCCNSSSNTPRSQEAYAPASSTVRASHLPLSSQSCKS 525
SS+ + + S++S SSSN+ S + +P+SS+ +S P SS S S
Sbjct: 85 SSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPS 136
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,060,028
Number of Sequences: 237096
Number of extensions: 2179720
Number of successful extensions: 9979
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 9003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9934
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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