Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1m24
(716 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 49 8e-07
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|... 33 0.054
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 29 0.66
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 2.0
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 27 2.7
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 27 2.7
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 26 4.7
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 6.2
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 6.2
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb... 26 6.2
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 26 6.2
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 25 8.2
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 25 8.2
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 48.8 bits (111), Expect = 8e-07
Identities = 55/217 (25%), Positives = 101/217 (46%), Gaps = 15/217 (6%)
Frame = +1
Query: 28 ENCIYANVFVPASATLNSDELCEDNSLPILVNIHGGGFQTGSGNRDLH-GPELLMLKD-- 198
E+C++ N++VPA ++ E P+L IHGG Q G+ P+ L
Sbjct: 80 EDCLFLNIWVPAG-----EKPAE--GWPVLYFIHGGWLQVGNPLHYRQCDPQDLQADGSP 132
Query: 199 --VIVVNFNYRLAIFGYLS----LASHKIPGNNGLRDMVTLLKWVQRNAKVFGGDPKRVT 360
I+V+ +RL +FG+L+ L N G D L+W ++ + FGG+ + +
Sbjct: 133 AKFILVSPGHRLNLFGFLAGKELLEEDPKSSNFGFWDQRLGLEWTYKHIESFGGNKENIA 192
Query: 361 ILGESAGAASVHLLMLSRA----SKGLFNKAIIMS-GTAI-PNFYSSSPIYAKYISDMFL 522
+ G SAG+ S ++ + + +A+++S G ++ P S I ++ F
Sbjct: 193 VGGISAGSYSALFQLIYETYHPEANQIIKRALLLSNGLSVQPKSVEESQIQFNELAQKF- 251
Query: 523 GELGLNSTELTSDEIHQTLTELPLDDIMRANDVVQYR 633
G+ EL+S E + L +P D+ A++++ R
Sbjct: 252 ---GI-PLELSSAEKLEKLRAIPFQDL--ADNILNLR 282
>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 376
Score = 32.7 bits (71), Expect = 0.054
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +1
Query: 262 KIPGNNGLRDMVTLLKWVQRNAKVFGGDPKRVTILGESAGAA 387
K P ++ + + + W+ NA + DP+R+ LGE GA+
Sbjct: 230 KFPLSDAVEFVSLCVDWIVENAIYYDADPERIFFLGEDTGAS 271
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 29.1 bits (62), Expect = 0.66
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 289 DMVTLLKWVQRNAKVFGGDPKRVTIL-GESAGAASVHLL 402
D + KWV N + G +PKR L G SAG V +L
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVL 181
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 232 IFGYLSLASHKIPGNNGLRDMVTLLKWV 315
I GYLSL+ K GN+ + LL WV
Sbjct: 50 ISGYLSLSKSKALGNSSVAGSDILLSWV 77
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 370 ESAGAASVHLLMLSRASKGLFNKAIIMSGTAIPNFYSSSPIYA 498
E G +++ +S KGL ++++ ++ +I NFY SS +++
Sbjct: 267 EIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYESSLVFS 309
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = -1
Query: 620 TSLALIISSNGNSVKV**ISSDVNSVEFKPSSPRNMSE 507
T A I+ N VK I S+V S + SSP NMSE
Sbjct: 599 TEAAEIMRKRRNKVKPKGIKSEVASDKITDSSPGNMSE 636
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 4.7
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -3
Query: 177 RSMQISIARSCLEPTTVDI----HQYGQ*IVFAKFIAVQSRRRRYKYISINTVFTHS 19
R +I+++ S + PT+VDI + + IV +F VQS R Y YIS+ V THS
Sbjct: 48 RRSKIALS-SFIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFV-THS 102
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +1
Query: 349 KRVTILGESAGAASVHLLMLSRASKGLFNKAIIMSGTAI 465
+ +T+LGESAG + + + NK + G A+
Sbjct: 192 RNITVLGESAGGTLILSFLYQISELSKLNKVVWPKGVAL 230
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = -3
Query: 369 SEYCHSLRVSPEYFCISLHPL*QRHHVSQSIITRNLMRSKRQVSENGQSVIKIY 208
S Y L V Y C+ + L HV ++ I N+ R V +SVIK Y
Sbjct: 441 SLYVTVLCVLAPYRCLGIGSL-LIDHVKKTAINNNIDRISLHVQTTNESVIKWY 493
>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 408 QHEKVY*CCSSTFSEYCHSLRVSPEYFCISLHPL*QRHHVSQSIITRNLMRS 253
Q+ ++ CS S L+ P+Y ISL L H+S++ I + RS
Sbjct: 523 QNPQLLKTCSQLLSSCSCFLQNHPQYLNISLPVLFDALHISETSIQMTVSRS 574
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.8 bits (54), Expect = 6.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 93 RRQFTAHIGEYPRWWV 140
R QF H G+ P WW+
Sbjct: 1477 RSQFLHHFGKNPSWWL 1492
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 625 QYRAGLTSFVPVVEKEGHDYTRI 693
QY+ L F P++EK +DY +
Sbjct: 801 QYKHKLDEFTPILEKSENDYNGV 823
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 13 RKGMSENCIYANVFVPASATLNSDELCEDNSLPILVNI 126
RKG I A P + LCEDN++P L +
Sbjct: 66 RKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTV 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,998
Number of Sequences: 5004
Number of extensions: 70672
Number of successful extensions: 213
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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