Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1m21
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    27   0.12 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    27   0.21 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.84 
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   0.84 
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   0.84 
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    24   1.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    24   1.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 524
           W P EYG +        +I    I+ Y+   GN++V  +T A       +SW P
Sbjct: 97  WNPEEYGGVEMLYVPSENIWLPDIVLYNNADGNYEVTLMTKATLKYTGDVSWKP 150


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
 Frame = +3

Query: 345 HESSVNSVAWAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSIS 515
           HE   +   W PAEYG +         I    I+ Y+   G + V  +T A       + 
Sbjct: 75  HEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNADGEYGVTTMTKAILHYTGKVL 134

Query: 516 WCP 524
           W P
Sbjct: 135 WTP 137


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 524
           W P EYG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 92  WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNYEVTLMTKATVYYSGLVVWQP 145


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 84  DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 203
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 84  DMIHDAELDYYGLKLATCSSDNSVKIYDIKNGTQTLAADL 203
           D + +      G  L T  SDN  KIY++    Q  A D+
Sbjct: 101 DQLQERAQSVMGKCLPTSGSDNCNKIYNLAKCVQESAPDV 140


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 324 KLYEYTGHESSVNSVAWA 377
           K+Y ++GHES++ SV  A
Sbjct: 250 KIYLFSGHESNIASVLHA 267


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 324 KLYEYTGHESSVNSVAWA 377
           K+Y ++GHES++ SV  A
Sbjct: 265 KIYLFSGHESNIASVLHA 282


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = +3

Query: 372 WAPAEYGLILACCSSDGSI---SIIQYSQDTGNWDVKKITGAHAIGVNSISWCP 524
           W P +YG +         I    I+ Y+   GN++V  +T A       + W P
Sbjct: 84  WNPDDYGGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHHTGKVVWKP 137


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 648 LQPIDHLALSKS*LNYH 598
           +QP + L LSK   NYH
Sbjct: 472 IQPQEQLTLSKVTSNYH 488


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,595
Number of Sequences: 438
Number of extensions: 3914
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)