Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1m19
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0103 + 16046012-16046018,16046214-16046366,16046908-160471...    30   1.5  
02_01_0258 - 1709672-1709752,1710277-1710460,1710627-1710841,171...    29   1.9  
11_06_0274 - 21811996-21812256                                         28   5.9  
11_01_0192 - 1523572-1526097                                           28   5.9  
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861...    28   5.9  
06_03_0854 + 25400855-25403741,25406174-25407708                       27   7.7  
05_02_0114 + 6753868-6754126,6754225-6754592,6754704-6754992,675...    27   7.7  
03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    27   7.7  

>01_04_0103 +
           16046012-16046018,16046214-16046366,16046908-16047158,
           16047509-16047631,16047818-16047931,16048153-16048315,
           16048867-16049462
          Length = 468

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +2

Query: 161 ELGNPEPLAECSNPKLPGPCKDIQCVFEKSGF-LTENKTLIKEAYKTHLRQWAKEHEGWS 337
           ++ N  P+ +  N        +++CV +K+G   TE   +  + YK  L QW K+H    
Sbjct: 392 DVSNTPPVGQELNKPAEVTLLNVKCVEQKNGLQFTEGPAV--DRYKEILVQWTKDHGAEF 449

Query: 338 VAVEKA 355
           V+ + A
Sbjct: 450 VSFDAA 455


>02_01_0258 -
           1709672-1709752,1710277-1710460,1710627-1710841,
           1711321-1711390,1711525-1711607,1711720-1711884,
           1712068-1712172,1713021-1713140,1713620-1713718,
           1713790-1713885,1714367-1714480,1715265-1715372,
           1716200-1716264,1716430-1716609,1716747-1717397,
           1717497-1717565,1717639-1717858
          Length = 874

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 98  FTVAQAAKATLKPISACCNIPELGNPEPLAEC---SNPKLP 211
           F VA +  A+ K IS CC   ++     +AEC   SNP +P
Sbjct: 410 FEVAPSISASEKIISVCCKSSKISLALDVAECLCKSNPDMP 450


>11_06_0274 - 21811996-21812256
          Length = 86

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 312 GRKSTRVGQWPWR-RPSATA 368
           G++S+ V +WPWR RP+A A
Sbjct: 20  GQRSSGVRRWPWRTRPTAAA 39


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 299 HLRQWAKEHEGWSVAVEKAISDCVDKDLRQYL 394
           H+ QW    +G S+A+E+ I+ C      ++L
Sbjct: 437 HVHQWQTHGDGHSLAIEEDIAGCSGSSSSEFL 468


>07_03_0207 -
           15183894-15184685,15184993-15185078,15186042-15186144,
           15186890-15186971,15187112-15187203,15187295-15187383,
           15187467-15187547,15188610-15188724,15188894-15188935
          Length = 493

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 140 SACCNIPELGNPEPLAECSNPKLPGP 217
           SACC IP++ +  P A+ +N  LP P
Sbjct: 223 SACCGIPQVASMVP-AQPANAPLPNP 247


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 274  PYQGSIQNASSTMGERARGLVSGRGEGHQRL 366
            P +G  + A +T   R RG+ +GRG G  R+
Sbjct: 1333 PERGRGRVAEATFASRGRGVWNGRGRGRGRI 1363


>05_02_0114 +
           6753868-6754126,6754225-6754592,6754704-6754992,
           6755838-6755909,6757440-6757666
          Length = 404

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 101 TVAQAAKATLKPISACCNIPELGNPEPLAECSNP 202
           TVA   + T +P+ ACC      N  P A C +P
Sbjct: 324 TVAMYTRFTQQPLKACCGGGGPYNYNPGAACGSP 357


>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 332 WSVAVEKAISDCVDKDLRQYLEFPCSAY 415
           W +   +  S+C+ KDL Q L   C+ Y
Sbjct: 623 WDIEAMRQGSECIGKDLMQMLYLFCATY 650


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,866,308
Number of Sequences: 37544
Number of extensions: 310768
Number of successful extensions: 852
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)