Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1m12
         (134 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   0.25 
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    20   2.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    20   2.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    19   7.2  

>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
          precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 0.25
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +1

Query: 22 SIVTISYFLFLIFNT 66
          S + I+YF+FL FN+
Sbjct: 15 SFILINYFIFLYFNS 29


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 62  IHNRHFNFFNIERSLNKSI 118
           +HN   N F I +S N+ I
Sbjct: 55  VHNHIQNIFKIIKSTNEKI 73


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 62  IHNRHFNFFNIERSLNKSI 118
           +HN   N F I +S N+ I
Sbjct: 38  VHNHIQNIFKIIKSTNEKI 56


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = -2

Query: 94  NIKKVKVPVMY*KLKTKNN*SLQYFNK 14
           N + + +PV Y  L + +   L YF +
Sbjct: 188 NQQNILIPVNYSALLSHDEQQLSYFTQ 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,178
Number of Sequences: 438
Number of extensions: 571
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used:  2572467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)