Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1m10
(722 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.031
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz... 30 0.29
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 28 1.6
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 28 1.6
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 1.6
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr... 27 3.6
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 27 3.6
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 4.7
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual 26 4.7
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 26 6.3
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 8.3
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom... 25 8.3
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 25 8.3
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4... 25 8.3
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.3
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.5 bits (73), Expect = 0.031
Identities = 28/101 (27%), Positives = 51/101 (50%)
Frame = +1
Query: 325 ANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTL 504
A+ T+ L +S AT + A ++ +L + + SS T++ +S ST+ SL
Sbjct: 102 ASPTSSSLTSSSATSSSLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLAS 161
Query: 505 RATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTS 627
+TN S P+S +++ L +T+ S T++SL +S
Sbjct: 162 SSTNSTTSATPTSSATSS---SLSSTAASNSATSSSLASSS 199
Score = 27.9 bits (59), Expect = 1.6
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 445 SSCTNNHRSSHS-TSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFC 621
SS T++ +S S TS SL +TN S P+S T+ +S+ S +TTS
Sbjct: 73 SSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTS---SSATSSSLASSSTTSSSL 129
Query: 622 TSSSVLKYAFLCVDTIRQGLLLKSFIVLSRIA 717
SSS+ + L +I L S S +A
Sbjct: 130 ASSSITS-SSLASSSITSSSLASSSTTSSSLA 160
Score = 27.5 bits (58), Expect = 2.1
Identities = 24/107 (22%), Positives = 46/107 (42%)
Frame = +1
Query: 304 PVKNPHFANGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHST 483
P+ + + T ATS + + + L PS+ A + T +S ++ +S ++
Sbjct: 254 PLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSVNS 313
Query: 484 SRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCT 624
+ T A++ P+S + S+ +T S+ S T TS T
Sbjct: 314 ---TTTTSASSTPLSSVSSANSTTATSTSSTPLSSVNSTTATSASST 357
Score = 27.1 bits (57), Expect = 2.7
Identities = 25/101 (24%), Positives = 45/101 (44%)
Frame = +1
Query: 328 NGTTGWLATSRATR*TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLR 507
+ T+ LA+S T A S+ + A + + +S + N +S + + S++
Sbjct: 189 SATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSIS-- 246
Query: 508 ATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCTSS 630
+ V S +S STT ATS+ T+SL +S+
Sbjct: 247 -STVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSST 286
>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
L35|Schizosaccharomyces pombe|chr 2|||Manual
Length = 370
Score = 30.3 bits (65), Expect = 0.29
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 6/126 (4%)
Frame = +3
Query: 267 YYTLAMTDPDAPSRKEPTFREWHHWLVGN--IQGNEVNSGETLSQYVGSGPP---EKTGL 431
+Y++ D D P+ + F +WL+ N I+ ++ +T + PP
Sbjct: 234 HYSVITLDLDVPNYETNRFETHCNWLLTNIPIEASKRVPIDTSKAFFQYRPPIVHRGEDK 293
Query: 432 HRYVFLLYKQPSKLTFDEPRLTNTSSDKRANFKIAEFAKKYNLGDPIAGNFYEAQYD-DY 608
HR + L+ +Q S + P +++ R F ++EF Y+L +P+ + + + +D D
Sbjct: 294 HRILTLVLRQKSS-SISIP----SNALVRERFDLSEFCSIYDL-EPVGAHLWRSGWDSDA 347
Query: 609 VPILYK 626
V +L K
Sbjct: 348 VALLSK 353
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = -1
Query: 356 DVANQPVVPFAKCGFFTGRRIRVGHGQSVVLSWLRVPFH*RLVFH-----LSWSQLITFF 192
D + + A+C F + + + +S++ S +R+ ++ + ++ L W Q I +
Sbjct: 438 DYLDNDIYVHARCLFLLTKTLNLDSLKSILCSRVRLYYNIEIAYYFTDVLLKWFQPIIRY 497
Query: 191 NFDSAWVFH 165
FD+A +F+
Sbjct: 498 EFDNALIFY 506
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/53 (41%), Positives = 28/53 (52%)
Frame = -1
Query: 422 LFRRSRAHVLGQSFAGVYLVALDVANQPVVPFAKCGFFTGRRIRVGHGQSVVL 264
LF H +G +AG L + VA P+ PFA FF GR+IR +VVL
Sbjct: 527 LFAVQMFHNMGVGWAGSLLGFIAVALIPM-PFAF--FFFGRKIREKSKMAVVL 576
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 530 FEIGTFVARSVSESRLVECELRWLF 456
F +G FVARS+ +SR++ + LF
Sbjct: 1375 FALGQFVARSIYDSRIISIQFNPLF 1399
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 1.6
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +1
Query: 433 TDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSS---PRSTT*GIRLRATSTKRSMT 603
T + SS T++ SS S+S + + +++ IS SS P ST+ I ++S+ +
Sbjct: 243 TSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTS 302
Query: 604 TTSLFCTSSS 633
T+S +SSS
Sbjct: 303 TSSTISSSSS 312
Score = 25.4 bits (53), Expect = 8.3
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 433 TDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSS-PRSTT*GIRLRATSTKRSMTTT 609
T + SS +++ SS S+S S T ++ + S SS P ST+ I ++S+ +T
Sbjct: 262 TASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTL 321
Query: 610 SLFCTSSS 633
S SSS
Sbjct: 322 SSSSMSSS 329
>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1225
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/86 (25%), Positives = 36/86 (41%)
Frame = +3
Query: 129 DVIPKAPAALLQVKYPSGVEVKEGNELTPTQVKDEPSVKWDAEPGQYYTLAMTDPDAPSR 308
D+I K L++ +P G + LTP VK E V+ G+ + D P+
Sbjct: 994 DLISKGATKPLEIAFPDGASILVAFRLTPVPVKLE-EVEMYENMGEMTVDVIKATDLPAA 1052
Query: 309 KEPTFREWHHWLVGNIQGNEVNSGET 386
+ ++V +QG EV +T
Sbjct: 1053 DSNGKSD--PFVVFELQGEEVYRTKT 1076
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 540 FAKKYNLGDPIAGNFYEAQYDDYVPI 617
F K+Y DP AGN ++A YDD + +
Sbjct: 517 FYKQYKPFDP-AGNKHDANYDDIIEL 541
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Frame = +1
Query: 421 RQACTDTCSSCTNNHRSSHSTSRD----SLTLRATNVPISKLPSSP 546
+Q +D+ S ++NH S+H T D S + ++ P +LP+SP
Sbjct: 36 KQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSP 81
>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 706
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +3
Query: 372 NSGETLSQYVGSGPPEKTGLHRYVFLLYKQPSKLTFDEPRLTNTSSDKRANF 527
N+G QY G P+ TG + + QP + F +P+ T + F
Sbjct: 329 NTGFVQPQYTGFVQPQHTGFVQPQATGFMQPQRTGFVQPQATGFVQPQATGF 380
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 6.3
Identities = 24/109 (22%), Positives = 38/109 (34%)
Frame = +1
Query: 391 PSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIR 570
PST DL+K+ TNN ST +S +T K P +
Sbjct: 2 PST---DLKKQADAAVESDVNTNNEAVESSTKEESSNTPSTETQPEKKAEEPEAAAEPSE 58
Query: 571 LRATSTKRSMTTTSLFCTSSSVLKYAFLCVDTIRQGLLLKSFIVLSRIA 717
+T T S T +S Y ++ + +L + F + +A
Sbjct: 59 STSTPTNASSVATPSGTAPTSASLYVGELDPSVTEAMLFELFNSIGPVA 107
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 8.3
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +1
Query: 436 DTCSSCTNNHRSSHSTSRDSLTLRATNVPISKLP-SSPRSTT*GIRLRATSTKRSMTTTS 612
D +S T + STS +++ +T++P + SSP S++ + +ST T+
Sbjct: 235 DIAASTTASSTLPVSTSEATVSF-STDIPATPSTLSSPASSSSSYLVETSSTLTDSVFTT 293
Query: 613 LFCTS-SSVLKYAFL 654
+ TS SSV+ Y +
Sbjct: 294 VTATSDSSVITYTLI 308
>SPBC6B1.05c |||ubiquitin-like conjugating
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 649
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = +3
Query: 315 PTFREWHHWLVGNIQGNE--VNSGETLSQ 395
P+F+E HW+V ++ E + SG LSQ
Sbjct: 139 PSFKETPHWIVKDLSPAESLIPSGPILSQ 167
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 8.3
Identities = 19/63 (30%), Positives = 35/63 (55%)
Frame = +1
Query: 445 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCT 624
SS +++ SS +++ S +L ++ S PS+ STT I +++ S++T+S
Sbjct: 111 SSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTT-SIPSISSTISSSVSTSSFTSL 169
Query: 625 SSS 633
SSS
Sbjct: 170 SSS 172
>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
Tip41|Schizosaccharomyces pombe|chr 3|||Manual
Length = 252
Score = 25.4 bits (53), Expect = 8.3
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Frame = +3
Query: 306 RKEPTFREWHHWLVGNIQGNEVNSGE--TLSQYVGSGPPEKTGLHRYVFLLYK-QPSKLT 476
+K+ F + +W + +G+ + S E L +G PPE T + Y+ + YK QP
Sbjct: 2 QKQDDF-SFKYWTIKVQRGSILKSHEMENLQSTLGFPPPEMTFGNNYISIEYKNQPVVGF 60
Query: 477 FDEPRLTNTSSDKRANFKIAEFAKKY 554
F E L + K + FAK +
Sbjct: 61 FTEDALKMVGT-KPEDVMQVSFAKDW 85
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 445 SSCTNNHRSSHSTSRDSLTLRATNVPISKLPSSPRSTT*GIRLRATSTKRSMTTTSLFCT 624
SS + + + TS SLT +P + LP+S + T + +T+ S S F +
Sbjct: 391 SSFPDGFKPINPTSFPSLTSSTKKIPSTTLPTSSKMITTTTPSVSNNTQSSFLIISTFTS 450
Query: 625 S 627
S
Sbjct: 451 S 451
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,038,233
Number of Sequences: 5004
Number of extensions: 67268
Number of successful extensions: 197
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -