Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1m05
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    28   1.5  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   2.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    26   4.7  
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.2  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    25   8.2  

>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -1

Query: 319 SIYHCDRSFSNISNTIHSISFLNA 248
           S++    +FSNI++ IH ISF NA
Sbjct: 800 SLFRWSATFSNIADGIHRISFNNA 823


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 475 FYFLKSLIMQLFEPNIKN-STQLSLQSI*ELTISKYYKGENKNP*IHVDIYDLSIYHCDR 299
           F  L++ IM+ F+  + + S    +Q I +L      K ENK      D     IYHC++
Sbjct: 773 FDSLQNAIMETFDKQVTHCSVNHLVQQIRKL------KDENKKDQSGTDKLMKKIYHCEQ 826

Query: 298 SFSNISNTIHSI 263
           S    +N++ ++
Sbjct: 827 SLKEKTNSLETL 838


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 409 TTVYYFLYLVRKVALLTILENKTTLLLHDVFVLN 510
           T  +YF+YL RKV +   +ENK      ++ +++
Sbjct: 370 TVAFYFIYL-RKVMIPKFVENKGKFPAEEILIIS 402


>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +3

Query: 372 YLLIVSS*IDCNDNCVLFFIFGSKSCIINDFRK*NYFTFTRCVCF 506
           YLL  S  I   DNC +FF F  + C ++ F K  + +F R   F
Sbjct: 34  YLLFPSG-IQELDNCTIFFRFQDQLC-LSVFSKLQHPSFERSAFF 76


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 636 LYFILCTYPFYENY 677
           LY++L T P YENY
Sbjct: 279 LYYVLATDPTYENY 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,810
Number of Sequences: 5004
Number of extensions: 57530
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)