Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1m05
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   5.1  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.7  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 675 NFRKTGRYKV*NIRYVTTTEHKAYNKSSQVNKKIE*QGIHKNVNLRNYS 529
           N R+  +Y+  +         +  +K S++   +  + IH N N +NY+
Sbjct: 285 NEREYRKYRETSKERFRDRRERERSKESKIISSLSNKTIHNNNNYKNYN 333


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 632 YLIFYTLYLPVLRKLHGG 685
           Y +F  L+ P++   HGG
Sbjct: 58  YTLFADLFDPIIEDYHGG 75


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +2

Query: 632 YLIFYTLYLPVLRKLHGG 685
           Y +F  L+ P++   HGG
Sbjct: 74  YTLFADLFDPIIEDYHGG 91


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,709
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)