Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1l14
(746 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz... 60 3e-10
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac... 50 3e-07
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon... 36 0.008
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.93
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 28 1.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 2.1
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 5.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.0
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 26 5.0
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.0
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 26 6.6
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 8.7
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 25 8.7
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 25 8.7
>SPCC1259.09c |||pyruvate dehydrogenase protein x
component|Schizosaccharomyces pombe|chr 3|||Manual
Length = 456
Score = 60.1 bits (139), Expect = 3e-10
Identities = 51/190 (26%), Positives = 97/190 (51%), Gaps = 24/190 (12%)
Frame = +1
Query: 211 SLSKELRHFHTSHAVNKIVA-FKLSDIGEGIREVVIKEWFVKVGDNVQQFDNICEVQSDK 387
SLS + R+FH S A+N + + F++ + + E I +W K GD+ + D + EV++DK
Sbjct: 18 SLSVKQRYFHCS-ALNGVASMFRMPALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDK 76
Query: 388 AAVTITSRYDGIITRLYHDIDQTALVGQPLVDI-DVQDSENDGK-PTDVAPD-------- 537
A + + + +GI+ ++ + VG+ + + D +D+ D + P D A
Sbjct: 77 ATMDVEVQDNGILAKVLIEKGSNIPVGKNIAIVADAEDNLKDLELPKDEASSEEQSFSSS 136
Query: 538 ----KPVAE-------IDAPKTEQ-NQKIKVLTTPAVRRIAAQFKVDLS-AVKATGRNGR 678
KP+ + ++ T Q N + P+V + Q+K++ ++ ATG +GR
Sbjct: 137 KEEVKPIVQDRETKSNVEHKSTSQANDAVNKSFLPSVSYLIHQYKIENPWSIPATGPHGR 196
Query: 679 VLKEDMLSHL 708
+LK D+L+H+
Sbjct: 197 LLKGDVLAHV 206
>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 483
Score = 50.4 bits (115), Expect = 3e-07
Identities = 34/145 (23%), Positives = 69/145 (47%), Gaps = 23/145 (15%)
Frame = +1
Query: 331 KVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTAL-VGQPLV--------- 480
K+GD ++ D +CE+++DKA + + +G + ++ + + VG+PL
Sbjct: 76 KIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETGTKDVPVGKPLAVTVENEGDV 135
Query: 481 ----DIDVQDSENDGKPTDVAPDK--PVAEIDAPKTEQNQKI-------KVLTTPAVRRI 621
D ++DS +K P +E + +T + +V +P R++
Sbjct: 136 AAMADFTIEDSSAKEPSAKSGEEKSAPSSEKQSKETSSPSNVSGEERGDRVFASPLARKL 195
Query: 622 AAQFKVDLSAVKATGRNGRVLKEDM 696
A + +DLS ++ +G NGR++K D+
Sbjct: 196 AEEKDLDLSQIRGSGPNGRIIKVDI 220
>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
of oxoglutarate dehydrogenase complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 35.5 bits (78), Expect = 0.008
Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
Frame = +1
Query: 292 EGIREVVIKEWFVKVGDNVQQFDNICEVQSDKAAVTITSRYDGIITRLYHDIDQTALVGQ 471
E I E + +W + G+ V + + I V++DK +T+ G++ T + Q
Sbjct: 52 ESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQLVKEGDTITIDQ 111
Query: 472 PLVDIDVQDSENDGKPTDVAPDK-PVAEIDAPK 567
+ ID + +G D+ A+ DA K
Sbjct: 112 DIAVIDTSAAPPEGGSAGPKKDEVKTADADAAK 144
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 0.93
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Frame = -1
Query: 572 SVFGASISATGLSGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVT 393
S F +SI+ SG +S PS S +SI + + + S+S S ++ +
Sbjct: 551 SDFSSSITTIS-SGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609
Query: 392 AALSLCTSQMLSNC*TLSPTLTNHSLM-TTSRIPSPISESLKATI 261
+ S+ +S S+ SPT + SLM ++S I S S L ++I
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSI 654
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +1
Query: 145 IKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDI 288
++ T Q ARN L YK LN ++ AVN I A+ L+ +
Sbjct: 255 LQQTFQEARNTDPLVYKWVLNFFCKSVVKQAEAEVAVNPISAYPLAKV 302
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 2.1
Identities = 41/167 (24%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Frame = -1
Query: 743 NTTSFESSELMFK*DNMSSLRTLPFLPVALTALKSTLN*AAILLTAGVVNTLIFWFCSVF 564
NT+S SS L SSL + L + T ++ + + LT+ + S
Sbjct: 66 NTSSASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTT 125
Query: 563 GASISATGLSGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPS--YRLVMVTA 390
+S++++ ++ ++ S S S ST + + S S S + TA
Sbjct: 126 SSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA 185
Query: 389 ALSLCTSQMLSNC---*TLSPTLTNHSLMTTSRIPSPISESLKATIL 258
A + TS L++ T S T T+ SL +T+ S S SL ++ L
Sbjct: 186 ASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSL 232
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 26.2 bits (55), Expect = 5.0
Identities = 21/102 (20%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Frame = +1
Query: 292 EGIREVVIKEWFVKVGDNVQQFDN----ICEVQSDKAAVTITSRYDGIITRLYHD---ID 450
+ + ++++ E V G N + F++ + E+++ A + R I L+H +
Sbjct: 8 DDLEKLLVAEQNVPYGKNYESFEDEENYLLELRNANALENLEHR--SIPNDLFHSSQPVG 65
Query: 451 QTALVGQPLVD-IDVQDSENDGKPTDVAPDKPVAEIDAPKTE 573
G + +D+ S+N TD++ D+ + + AP+T+
Sbjct: 66 SPTRNGDDIPSTLDLYSSDNAAIDTDISEDETINQRHAPQTD 107
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.0
Identities = 25/102 (24%), Positives = 44/102 (43%)
Frame = -1
Query: 569 VFGASISATGLSGATSVGFPSFSESCTSISTRGCPTRAV*SISWYSRVMIPSYRLVMVTA 390
V ++ T + +TSV + S + T ++T C T S+ Y+ + S + ++
Sbjct: 522 VTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTST--SVP-YTSTPVTSSNYTISSS 578
Query: 389 ALSLCTSQMLSNC*TLSPTLTNHSLMTTSRIPSPISESLKAT 264
T +NC T + L T++ I SP S S +T
Sbjct: 579 TPVTSTPVTTTNC-----TTSTSVLYTSTPITSPNSTSSSST 615
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 471 LSYKSGLINIMVQSCYDTVVSASDGDSCLVALYFANVVELLNIITDF 331
L+Y S + N++V C +VVS+ + L ++L++ IT F
Sbjct: 1310 LAYASKIENLLVLQCAISVVSSLGHEHISCVLTQGAYIDLISCITKF 1356
>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -1
Query: 113 NTDLRTRIDIAMKELRTR 60
NTDLR+R+DI+ +L+ R
Sbjct: 408 NTDLRSRVDISESKLKKR 425
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 6.6
Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Frame = -3
Query: 669 SASCFNGTQVYFKLSGDSSHRRS-S*YFNFLVLFRFRSVYFSNRLIRRNVCGFPVI-FRV 496
S + N Y KLS DSS + + +++F L+ S + N +I +++ P +
Sbjct: 145 SFNLHNFQSFYQKLSLDSSLILALNNFWSFFNLYLTNSPHIMNDIINKDIDNIPKPGSEL 204
Query: 495 LHVNID*GLSYKSGLINIMVQSCYDT-VVSASDGDSCLVALYFANVVELLNIITDFDEPF 319
+ ++ D S + ++ Q Y T V+ + C+ + +N L+N D PF
Sbjct: 205 IELSRDSYNSQATFCLSAESQERYVTCVIPSIHIPECVGEVSISN---LINTFIDGPSPF 261
Query: 318 LDDDFSYPFTDIRKL 274
++ D S I L
Sbjct: 262 MNTDISADINPINVL 276
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/35 (25%), Positives = 20/35 (57%)
Frame = +1
Query: 475 LVDIDVQDSENDGKPTDVAPDKPVAEIDAPKTEQN 579
L D+D++ ++ + + D D+P+ + + P E N
Sbjct: 4105 LEDMDMEAADENKEEADAEKDEPMQDFEDPLEENN 4139
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.4 bits (53), Expect = 8.7
Identities = 25/91 (27%), Positives = 41/91 (45%)
Frame = +1
Query: 139 RKIKVTTQSARNGSQLSYKTPLNESLSKELRHFHTSHAVNKIVAFKLSDIGEGIREVVIK 318
R +V TQS +GSQ+S + E L K H + V + K++ +G R+ V+K
Sbjct: 627 RNYRVLTQSISSGSQISLLNIVVE-LKKASNHPYLFDGVEESWMQKIN--SQGRRDEVLK 683
Query: 319 EWFVKVGDNVQQFDNICEVQSDKAAVTITSR 411
+ G V + ++ D V I S+
Sbjct: 684 GLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQ 714
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -1
Query: 308 TSRIPSPISESLKATILLTA*LVWKCLNSLLKLSF 204
T R+PS I E +TI+ + + K L +L LSF
Sbjct: 323 TKRVPSRIMEGFSSTIIASFSSLLKKLLTLFVLSF 357
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,662
Number of Sequences: 5004
Number of extensions: 58250
Number of successful extensions: 187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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