Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1l10
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 26 2.5
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 26 3.3
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 26 3.3
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 25 4.3
SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|c... 25 4.3
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 25 5.7
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 25 5.7
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.7
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 5.7
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac... 25 7.5
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 24 9.9
SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces p... 24 9.9
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 24 9.9
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 26.2 bits (55), Expect = 2.5
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 335 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 216
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVKKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 25.8 bits (54), Expect = 3.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 335 HIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRRRSRFN 216
H +SQ KP E NVY ++KL + R SRFN
Sbjct: 8 HHVRKSQRSKPASE---NVYLKLLVKLYRFLARRTDSRFN 44
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 3.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 135 AKMRKQIHTIVLPTVVVIFLLICVYVYIKTRP 230
+K+ K + + + FLLIC++ YI++ P
Sbjct: 476 SKIVKPVSVVKRVAFNIPFLLICIFFYIQSSP 507
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 4.3
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +3
Query: 111 KRERKQEFAKMRKQIHTIVLPTVVVIFLLIC 203
KRE ++F+K+ K+I I T V +++C
Sbjct: 639 KREFHKDFSKLYKEILDIFNSTTVNFLMILC 669
>SPCC622.21 |wtf12||wtf element Wtf12|Schizosaccharomyces pombe|chr
3|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 4.3
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 84 GPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFLLICVY 209
GP ETA ER+QEF + I++++ + V+ + + +
Sbjct: 62 GPT-ETANPNVERRQEFKDLHPNIYSLLRLLIAVLAVSVVFF 102
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 25.0 bits (52), Expect = 5.7
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Frame = +3
Query: 36 LFIFADLLALKMRKLKGPVKETARQKRERKQEFAKMRK-----QIHTIVLPTVVVIFLLI 200
+FI D++AL ++ G V A + + + +++ Q+ TIV+ +++ I
Sbjct: 116 IFITFDIIALILQAAGGGVAGGADSGSQLQTQGSQIMLGGICFQLFTIVVFSILFSIFFI 175
Query: 201 CVYVYIKTRPST 236
+Y + RPST
Sbjct: 176 ALYTHHPIRPST 187
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 419 HLDMLGKTWNVSVINIV*TYSTKSLTCYHIESQSQ 315
H D++ W S+ T TK LTC +I S+ +
Sbjct: 221 HSDVMHPKWVHSLFEGTLTSETKCLTCENITSRDE 255
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 5.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +2
Query: 125 TRIRENAKTNS--YDCVTNCRCNIF 193
T + +A TNS YDC+ N CN F
Sbjct: 119 TPVECSASTNSHSYDCLWNFSCNSF 143
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 5.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 216 YTRTHKLIKILQRQLVTQSYEFVFAFS 136
+ +T L ILQ +VT ++ V+AFS
Sbjct: 688 FIKTQGLNSILQLDIVTHPFKSVYAFS 714
>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 24.6 bits (51), Expect = 7.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 288 DLFWGWFFKL*LGLNVVASERLCAICLYYVY-YRNIP 395
D+ W + LG+ + +C YY+Y Y+ IP
Sbjct: 441 DILATWKLLVALGMTPILYSFYALLCCYYIYSYKLIP 477
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 24.2 bits (50), Expect = 9.9
Identities = 7/25 (28%), Positives = 16/25 (64%)
Frame = -2
Query: 359 STKSLTCYHIESQSQLEKPPPE*VK 285
S ++ CY +++ + ++ PPP +K
Sbjct: 557 SISNICCYMMDASTHIDLPPPAIIK 581
>SPCC31H12.03c |||transcriptional regulator|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 9.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -3
Query: 343 LATTLSPNHNLKNHPQNKS 287
LA++ + NHN +PQN+S
Sbjct: 180 LASSNNKNHNQSKNPQNRS 198
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 24.2 bits (50), Expect = 9.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 370 YKHIAQSLSLATTLSPNHNLKNHPQNKSRM 281
YK +S TL H++K HP NKSR+
Sbjct: 428 YKDYPTVVSRIRTL---HHVKLHPDNKSRL 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,790,533
Number of Sequences: 5004
Number of extensions: 34946
Number of successful extensions: 97
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -